Data quality metrics extracted from 6qbm.cif.gz by aB_cif2table1 from BUSTER (Global Phasing Ltd.). See also the PDBx/mmCIF dictionary and a MXLIMS-compatible JSON representation.


Experimental information for 6QBM at RCSB, PDBe, PDBj

Experiment
Method
_exptl.method
X-RAY DIFFRACTION
Experimental protocol
_diffrn_radiation.pdbx_diffrn_protocol
SINGLE WAVELENGTH
Source type
_diffrn_source.source
SYNCHROTRON
Source details
_diffrn_source.type
ESRF BEAMLINE ID23-1
Synchrotron site
_diffrn_source.pdbx_synchrotron_site
ESRF
Beamline
_diffrn_source.pdbx_synchrotron_beamline
ID23-1
Temperature [K]
_diffrn.ambient_temp
100
Detector technology
_diffrn_detector.detector
PIXEL
Collection date
_diffrn_detector.pdbx_collection_date
2015-10-21
Detector
_diffrn_detector.type
DECTRIS PILATUS3 6M
Wavelength(s) [Å]
_diffrn_source.pdbx_wavelength_list
0.976256
Software
Data reduction
_software.classification
XDS
Data scaling
_software.classification
XSCALE
Phasing
_software.classification
PHASER
Refinement
_software.classification
REFMAC (5.8.0230)
General information
Spacegroup name
_symmetry.space_group_name_H-M
P 62
Unit cell parameters
_cell.length_{a,b,c} _cell.angle_{alpha,beta,gamma}
103.004 103.004 93.379 90.0 90.0 120.0
Wavelength
_diffrn_radiation_wavelength.wavelength
0.97626 Å

Data quality metricsOverallOuterShell
Low resolution limit [Å]
_reflns.d_resolution_low _reflns_shell.d_res_low
45.140 2.650
High resolution limit [Å]
_reflns.d_resolution_high _reflns_shell.d_res_high
2.500 2.500
Rmerge
_reflns.pdbx_Rsym_value
0.036 -
Rmeas
_reflns.pdbx_Rrim_I_all
0.041 -
  Rpim - -
  Total number of observations - -
Total number unique
_reflns.number_obs _reflns_shell.number_unique_obs
19631 3158
<I/σ(I)>
_reflns.pdbx_netI_over_sigmaI
19.20 -
Completeness [%]
_reflns.percent_possible_obs _reflns_shell.percent_possible_all
99.9 99.6
Multiplicity
_reflns.pdbx_redundancy _reflns_shell.pdbx_redundancy
4.5 4.7
CC(1/2)
_reflns.pdbx_CC_half _reflns_shell.pdbx_CC_half
1.000 0.290

Refinement
PDB entry ID
_entry.id
6QBM
Deposition date
_pdbx_database_status.recvd_initial_deposition_date
2018-12-21
Resolution
_refine.ls_d_res_low _refine.ls_d_res_high
45.1 - 2.500 Å
Rwork/Rfree
_refine.ls_R_factor_R_work _refine.ls_R_factor_R_free
0.1911 / 0.2366
Structure solution method
_refine.pdbx_method_to_determine_struct
MOLECULAR REPLACEMENT
Starting model (for MR)
_refine.pdbx_starting_model
5j1b