Data quality metrics extracted from 8q5j.cif.gz by aB_cif2table1 from BUSTER (Global Phasing Ltd.). See also the PDBx/mmCIF dictionary and a MXLIMS-compatible JSON representation.


Experimental information for 8Q5J at RCSB, PDBe, PDBj

Experiment
Method
_exptl.method
X-RAY DIFFRACTION
Experimental protocol
_diffrn_radiation.pdbx_diffrn_protocol
SINGLE WAVELENGTH
Source type
_diffrn_source.source
SYNCHROTRON
Source details
_diffrn_source.type
DIAMOND BEAMLINE I24
Synchrotron site
_diffrn_source.pdbx_synchrotron_site
Diamond
Beamline
_diffrn_source.pdbx_synchrotron_beamline
I24
Temperature [K]
_diffrn.ambient_temp
93
Detector technology
_diffrn_detector.detector
PIXEL
Collection date
_diffrn_detector.pdbx_collection_date
2023-03-19
Detector
_diffrn_detector.type
DECTRIS PILATUS3 6M
Wavelength(s) [Å]
_diffrn_source.pdbx_wavelength_list
0.9999
Software
Data reduction
_software.classification
xia2
Data scaling
_software.classification
XSCALE
Phasing
_software.classification
BALBES
Model building
_software.classification
Coot
Refinement
_software.classification
REFMAC (5.8.0405)
General information
Spacegroup name
_symmetry.space_group_name_H-M
P 21 21 2
Unit cell parameters
_cell.length_{a,b,c} _cell.angle_{alpha,beta,gamma}
121.27 46.89 75.73 90.0 90.0 90.0
Wavelength
_diffrn_radiation_wavelength.wavelength
0.99990 Å

Data quality metricsOverallInnerShellOuterShell
Low resolution limit [Å]
_reflns.d_resolution_low _reflns_shell.d_res_low
47.380 6.620 1.520
High resolution limit [Å]
_reflns.d_resolution_high _reflns_shell.d_res_high
1.480 4.680 1.480
Rmerge
_reflns.pdbx_Rmerge_I_obs _reflns_shell.Rmerge_I_obs
0.154 0.056 2.238
Rmeas
_reflns.pdbx_Rrim_I_all _reflns_shell.pdbx_Rrim_I_all
0.168 0.061 2.636
  Rpim - - -
  Total number of observations - - -
Total number unique
_reflns.number_obs _reflns_shell.number_unique_obs
139161 2819 10321
<I/σ(I)>
_reflns.pdbx_netI_over_sigmaI
9.82 - -
Completeness [%]
_reflns.percent_possible_obs
100.0 - -
Multiplicity
_reflns.pdbx_redundancy
12.3 - -
CC(1/2)
_reflns.pdbx_CC_half _reflns_shell.pdbx_CC_half
0.998 0.998 0.199

Refinement
PDB entry ID
_entry.id
8Q5J
Deposition date
_pdbx_database_status.recvd_initial_deposition_date
2023-08-09
Resolution
_refine.ls_d_res_low _refine.ls_d_res_high
47.4 - 1.480 Å
Rwork/Rfree
_refine.ls_R_factor_R_work _refine.ls_R_factor_R_free
0.1642 / 0.1892
Structure solution method
_refine.pdbx_method_to_determine_struct
MOLECULAR REPLACEMENT
Starting model (for MR)
_refine.pdbx_starting_model
WARNING: no starting model (for MR) given