Data quality metrics extracted from 2pz9.cif.gz by aB_cif2table1 from BUSTER (Global Phasing Ltd.). See also the PDBx/mmCIF dictionary and a MXLIMS-compatible JSON representation.


Experimental information for 2PZ9 at RCSB, PDBe, PDBj

Experiment
Method
_exptl.method
X-RAY DIFFRACTION
Experimental protocol
_diffrn_radiation.pdbx_diffrn_protocol
MAD
Source type
_diffrn_source.source
SYNCHROTRON
Source details
_diffrn_source.type
APS BEAMLINE 19-ID
Synchrotron site
_diffrn_source.pdbx_synchrotron_site
APS
Beamline
_diffrn_source.pdbx_synchrotron_beamline
19-ID
Temperature [K]
_diffrn.ambient_temp
100.0
Detector technology
_diffrn_detector.detector
CCD
Collection date
_diffrn_detector.pdbx_collection_date
2007-02-09
Detector
_diffrn_detector.type
ADSC QUANTUM 315
Wavelength(s) [Å]
_diffrn_source.pdbx_wavelength_list
0.9792, 0.9794
Software
Data collection #1
_software.classification
HKL-2000
Data collection #2
_software.classification
ADSC (Quantum)
Data reduction
_software.classification
HKL-2000
Data scaling
_software.classification
HKL-2000
Phasing #1
_software.classification
HKL-3000
Phasing #2
_software.classification
MLPHARE
Phasing #3
_software.classification
SHELXD
Phasing #4
_software.classification
SOLVE
Phasing #5
_software.classification
DM
Phasing #6
_software.classification
RESOLVE
Phasing #7
_software.classification
CCP4
Model building #1
_software.classification
DM
Model building #2
_software.classification
O
Model building #3
_software.classification
SHELXE
Model building #4
_software.classification
RESOLVE
Model building #5
_software.classification
Coot
Model building #6
_software.classification
CCP4
Refinement
_software.classification
REFMAC (5.2.0005)
General information
Spacegroup name
_symmetry.space_group_name_H-M
P 32 2 1
Unit cell parameters
_cell.length_{a,b,c} _cell.angle_{alpha,beta,gamma}
66.960 66.960 104.345 90.0 90.0 120.0
Wavelength
_diffrn_radiation_wavelength.wavelength
0.979200.97940 Å

Data quality metricsOverallOuterShell
Low resolution limit [Å]
_reflns.d_resolution_low _reflns_shell.d_res_low
38.780 2.900
High resolution limit [Å]
_reflns.d_resolution_high _reflns_shell.d_res_high
2.800 2.800
Rmerge
_reflns.pdbx_Rmerge_I_obs _reflns_shell.Rmerge_I_obs
0.084 0.299
  Rmeas - -
  Rpim - -
  Total number of observations - -
Total number unique
_reflns.number_obs
7016 -
<I/σ(I)>
_reflns.pdbx_netI_over_sigmaI _reflns_shell.meanI_over_sigI_obs
46.98 5.30
Completeness [%]
_reflns.percent_possible_obs _reflns_shell.percent_possible_all
99.6 96.4
Multiplicity
_reflns.pdbx_redundancy _reflns_shell.pdbx_redundancy
10.7 7.6
  CC(1/2) - -

Refinement
PDB entry ID
_entry.id
2PZ9
Deposition date
_pdbx_database_status.recvd_initial_deposition_date
2007-05-17
Resolution
_refine.ls_d_res_low _refine.ls_d_res_high
38.8 - 2.800 Å
Rwork/Rfree
_refine.ls_R_factor_R_work _refine.ls_R_factor_R_free
0.2130 / 0.2690
Structure solution method
_refine.pdbx_method_to_determine_struct
MAD