Data quality metrics extracted from 3pym.cif.gz by aB_cif2table1 from BUSTER (Global Phasing Ltd.). See also the PDBx/mmCIF dictionary and a MXLIMS-compatible JSON representation.


Experimental information for 3PYM at RCSB, PDBe, PDBj

Experiment
Method
_exptl.method
X-RAY DIFFRACTION
Source type
_diffrn_source.source
SYNCHROTRON
Source details
_diffrn_source.type
ESRF BEAMLINE ID14-1
Synchrotron site
_diffrn_source.pdbx_synchrotron_site
ESRF
Beamline
_diffrn_source.pdbx_synchrotron_beamline
ID14-1
Detector technology
_diffrn_detector.detector
CCD
Collection date
_diffrn_detector.pdbx_collection_date
2004-01-04
Detector
_diffrn_detector.type
ADSC QUANTUM 4r
Wavelength(s) [Å]
_diffrn_source.pdbx_wavelength_list
0.9340
Software
Data collection
_software.classification
DNA
Data reduction
_software.classification
XDS
Data scaling
_software.classification
SCALA
Phasing
_software.classification
PHASER (CCP4 supported)
Refinement
_software.classification
PHENIX (phenix.refine: 1.6.4_486)
General information
Spacegroup name
_symmetry.space_group_name_H-M
C 2 2 21
Unit cell parameters
_cell.length_{a,b,c} _cell.angle_{alpha,beta,gamma}
121.834 131.052 96.685 90.0 90.0 90.0
Wavelength
_diffrn_radiation_wavelength.wavelength
0.93400 Å

Data quality metricsOverall
Low resolution limit [Å]
_reflns.d_resolution_low
48.340
High resolution limit [Å]
_reflns.d_resolution_high
2.000
Rmerge
_reflns.pdbx_Rmerge_I_obs
0.094
  Rmeas -
  Rpim -
  Total number of observations -
Total number unique
_reflns.number_obs
52575
  <I/σ(I)> -
Completeness [%]
_reflns.percent_possible_obs
99.9
Multiplicity
_reflns.pdbx_redundancy
14.7
  CC(1/2) -

Refinement
PDB entry ID
_entry.id
3PYM
Deposition date
_pdbx_database_status.recvd_initial_deposition_date
2010-12-13
Resolution
_refine.ls_d_res_low _refine.ls_d_res_high
44.6 - 2.000 Å
Rwork/Rfree
_refine.ls_R_factor_R_work _refine.ls_R_factor_R_free
0.1473 / 0.1888
Structure solution method
_refine.pdbx_method_to_determine_struct
MOLECULAR REPLACEMENT
Starting model (for MR)
_refine.pdbx_starting_model
PDB ENTRY 1GD1