Experiment | |
---|---|
Method _exptl.method | X-RAY DIFFRACTION The method used in the experiment. |
Experimental protocol _diffrn_radiation.pdbx_diffrn_protocol | MAD SINGLE WAVELENGTH, LAUE, or MAD. |
Source type _diffrn_source.source | SYNCHROTRON The general class of the radiation source. |
Source details _diffrn_source.type | SSRL BEAMLINE BL11-1 The make, model or name of the source of radiation. |
Synchrotron site _diffrn_source.pdbx_synchrotron_site | SSRL Synchrotron site. |
Beamline _diffrn_source.pdbx_synchrotron_beamline | BL11-1 Synchrotron beamline. |
Temperature [K] _diffrn.ambient_temp | 100 The mean temperature in kelvins at which the intensities were |
Detector technology _diffrn_detector.detector | CCD The general class of the radiation detector. |
Collection date _diffrn_detector.pdbx_collection_date | 2007-04-08 The date of data collection. |
Detector _diffrn_detector.type | MARMOSAIC 325 mm CCD The make, model or name of the detector device used. |
Wavelength(s) [Å] _diffrn_source.pdbx_wavelength_list | 0.91837, 0.97910, 0.97886 Comma separated list of wavelengths or wavelength range. |
Software | |
Data collection _software.classification | MAR345 (CCD) The classification of the program according to its |
Data reduction _software.classification | XDS The classification of the program according to its |
Data scaling _software.classification | XSCALE (Wolfgang Kabsch) The classification of the program according to its |
Phasing #1 _software.classification | SHELX (George Sheldrick; gsheldr@shelx.uni-ac.gwdg.de) The classification of the program according to its |
Phasing #2 _software.classification | autoSHARP The classification of the program according to its |
Model building _software.classification | MolProbity (3beta29; D.C. & J.S. Richardson lab; molprobity@kinemage.biochem.duke.edu) The classification of the program according to its |
Refinement _software.classification | PHENIX (P.D. Adams; PDAdams@lbl.gov) The classification of the program according to its |
General information | |
Spacegroup name _symmetry.space_group_name_H-M | P 1 21 1 Hermann-Mauguin space-group symbol. Note that the |
Unit cell parameters _cell.length_{a,b,c} _cell.angle_{alpha,beta,gamma} | 32.92 Unit-cell length a corresponding to the structure reported in 98.71 Unit-cell length b corresponding to the structure reported in 58.56 Unit-cell length c corresponding to the structure reported in 90.00 Unit-cell angle alpha of the reported structure in degrees. 90.39 Unit-cell angle beta of the reported structure in degrees. 90.00 Unit-cell angle gamma of the reported structure in degrees. |
Wavelength _diffrn_radiation_wavelength.wavelength | 0.91837 The radiation wavelength in angstroms. 0.97910 The radiation wavelength in angstroms. 0.97886 ÅThe radiation wavelength in angstroms. |
Data quality metrics | Overall | InnerShell | OuterShell |
---|---|---|---|
Low resolution limit [Å] _reflns.d_resolution_low _reflns_shell.d_res_low | 28.689 The largest value in angstroms for the interplanar spacings | 28.689 The highest value in angstroms for the interplanar spacings | 1.550 The highest value in angstroms for the interplanar spacings |
High resolution limit [Å] _reflns.d_resolution_high _reflns_shell.d_res_high | 1.500 The smallest value in angstroms for the interplanar spacings | 3.230 The smallest value in angstroms for the interplanar spacings | 1.500 The smallest value in angstroms for the interplanar spacings |
Rmerge _reflns.pdbx_Rmerge_I_obs _reflns_shell.Rmerge_I_obs | 0.052 The R value for merging intensities satisfying the observed | 0.035 The value of Rmerge(I) for reflections classified as 'observed' | 0.468 The value of Rmerge(I) for reflections classified as 'observed' |
Rmeas | - | - | - |
Rpim | - | - | - |
Total number of observations _reflns_shell.number_measured_obs | - | 22581 The number of reflections classified as 'observed' | 18894 The number of reflections classified as 'observed' |
Total number unique _reflns.number_obs _reflns_shell.number_unique_obs | 59568 The number of reflections in the REFLN list (not the DIFFRN_REFLN | 11458 The total number of measured reflections classified as 'observed' | 9813 The total number of measured reflections classified as 'observed' |
<I/σ(I)> _reflns.pdbx_netI_over_sigmaI _reflns_shell.meanI_over_sigI_obs | 7.77 The mean of the ratio of the intensities to their | 17.80 The ratio of the mean of the intensities of the reflections | 1.90 The ratio of the mean of the intensities of the reflections |
Completeness [%] _reflns.percent_possible_obs _reflns_shell.percent_possible_all | 97.4 The percentage of geometrically possible reflections represented | 95.7 The percentage of geometrically possible reflections represented | 88.7 The percentage of geometrically possible reflections represented |
Multiplicity | - | - | - |
CC(1/2) | - | - | - |
Refinement | |
---|---|
PDB entry ID _entry.id | 2PYQ |
Deposition date _pdbx_database_status.recvd_initial_deposition_date | 2007-05-16 |
Resolution _refine.ls_d_res_low _refine.ls_d_res_high | 28.7 - 1.500 Å |
Rwork/Rfree _refine.ls_R_factor_R_work _refine.ls_R_factor_R_free | 0.1760 / 0.1950 |
Structure solution method _refine.pdbx_method_to_determine_struct | MAD |