Data quality metrics extracted from 6pup.cif.gz by aB_cif2table1 from BUSTER (Global Phasing Ltd.). See also the PDBx/mmCIF dictionary and a MXLIMS-compatible JSON representation.


Experimental information for 6PUP at RCSB, PDBe, PDBj

Experiment
Method
_exptl.method
X-RAY DIFFRACTION
Experimental protocol
_diffrn_radiation.pdbx_diffrn_protocol
SINGLE WAVELENGTH
Source type
_diffrn_source.source
SYNCHROTRON
Source details
_diffrn_source.type
ALS BEAMLINE 5.0.1
Synchrotron site
_diffrn_source.pdbx_synchrotron_site
ALS
Beamline
_diffrn_source.pdbx_synchrotron_beamline
5.0.1
Temperature [K]
_diffrn.ambient_temp
100
Detector technology
_diffrn_detector.detector
PIXEL
Collection date
_diffrn_detector.pdbx_collection_date
2016-11-16
Detector
_diffrn_detector.type
DECTRIS PILATUS3 6M
Wavelength(s) [Å]
_diffrn_source.pdbx_wavelength_list
1
Software
Data reduction
_software.classification
DIALS
Data scaling
_software.classification
Aimless (0.5.27)
Phasing
_software.classification
CRANK2
Refinement
_software.classification
REFMAC (5.8.0238)
General information
Spacegroup name
_symmetry.space_group_name_H-M
C 1 2 1
Unit cell parameters
_cell.length_{a,b,c} _cell.angle_{alpha,beta,gamma}
62.268 58.632 62.520 90.00 118.71 90.00
Wavelength
_diffrn_radiation_wavelength.wavelength
1.00000 Å

Data quality metricsOverall
Low resolution limit [Å]
_reflns.d_resolution_low
54.830
High resolution limit [Å]
_reflns.d_resolution_high
1.890
Rmerge
_reflns.pdbx_Rmerge_I_obs
0.115
Rmeas
_reflns.pdbx_Rrim_I_all
0.126
Rpim
_reflns.pdbx_Rpim_I_all
0.051
  Total number of observations -
Total number unique
_reflns.number_obs
10359
<I/σ(I)>
_reflns.pdbx_netI_over_sigmaI
10.70
Completeness [%]
_reflns.percent_possible_obs
77.4
Multiplicity
_reflns.pdbx_redundancy
6.0
CC(1/2)
_reflns.pdbx_CC_half
0.996

Refinement
PDB entry ID
_entry.id
6PUP
Deposition date
_pdbx_database_status.recvd_initial_deposition_date
2019-07-18
Resolution
_refine.ls_d_res_low _refine.ls_d_res_high
54.8 - 1.890 Å
Rwork/Rfree
_refine.ls_R_factor_R_work _refine.ls_R_factor_R_free
0.1704 / 0.2180
Structure solution method
_refine.pdbx_method_to_determine_struct
SAD