Data quality metrics extracted from 6pnh.cif.gz by aB_cif2table1 from BUSTER (Global Phasing Ltd.). See also the PDBx/mmCIF dictionary and a MXLIMS-compatible JSON representation.


Experimental information for 6PNH at RCSB, PDBe, PDBj

Experiment
Method
_exptl.method
X-RAY DIFFRACTION
Experimental protocol
_diffrn_radiation.pdbx_diffrn_protocol
SINGLE WAVELENGTH
Source type
_diffrn_source.source
SYNCHROTRON
Source details
_diffrn_source.type
SSRL BEAMLINE BL9-2
Synchrotron site
_diffrn_source.pdbx_synchrotron_site
SSRL
Beamline
_diffrn_source.pdbx_synchrotron_beamline
BL9-2
Temperature [K]
_diffrn.ambient_temp
100
Detector technology
_diffrn_detector.detector
PIXEL
Collection date
_diffrn_detector.pdbx_collection_date
2017-06-18
Detector
_diffrn_detector.type
DECTRIS PILATUS 300K
Wavelength(s) [Å]
_diffrn_source.pdbx_wavelength_list
0.9794
Software
Data reduction
_software.classification
MOSFLM
Data scaling
_software.classification
Aimless
Phasing
_software.classification
REFMAC
Refinement
_software.classification
PHENIX (1.11.1-2575_1496: ???)
General information
Spacegroup name
_symmetry.space_group_name_H-M
P 21 21 21
Unit cell parameters
_cell.length_{a,b,c} _cell.angle_{alpha,beta,gamma}
52.18 125.17 165.04 90.0 90.0 90.0
Wavelength
_diffrn_radiation_wavelength.wavelength
0.97940 Å

Data quality metricsOverallOuterShell
Low resolution limit [Å]
_reflns.d_resolution_low _reflns_shell.d_res_low
60.000 1.900
High resolution limit [Å]
_reflns.d_resolution_high _reflns_shell.d_res_high
1.850 1.850
Rmerge
_reflns.pdbx_Rmerge_I_obs _reflns_shell.Rmerge_I_obs
0.113 1.411
  Rmeas - -
Rpim
_reflns.pdbx_Rpim_I_all _reflns_shell.pdbx_Rpim_I_all
0.088 1.097
  Total number of observations - -
Total number unique
_reflns.number_obs _reflns_shell.number_unique_obs
92297 4557
<I/σ(I)>
_reflns.pdbx_netI_over_sigmaI _reflns_shell.meanI_over_sigI_obs
4.90 0.40
Completeness [%]
_reflns.percent_possible_obs _reflns_shell.percent_possible_all
99.1 99.7
Multiplicity
_reflns.pdbx_redundancy _reflns_shell.pdbx_redundancy
4.6 4.8
CC(1/2)
_reflns.pdbx_CC_half _reflns_shell.pdbx_CC_half
0.982 0.453

Refinement
PDB entry ID
_entry.id
6PNH
Deposition date
_pdbx_database_status.recvd_initial_deposition_date
2019-07-02
Resolution
_refine.ls_d_res_low _refine.ls_d_res_high
49.8 - 1.850 Å
Rwork/Rfree
_refine.ls_R_factor_R_work _refine.ls_R_factor_R_free
0.2021 / 0.2456
Structure solution method
_refine.pdbx_method_to_determine_struct
FOURIER SYNTHESIS
Starting model
_refine.pdbx_starting_model
4UH5