Data quality metrics extracted from 4pmb.cif.gz by aB_cif2table1 from BUSTER (Global Phasing Ltd.). See also the PDBx/mmCIF dictionary and a MXLIMS-compatible JSON representation.


Experimental information for 4PMB at RCSB, PDBe, PDBj

Experiment
Method
_exptl.method
X-RAY DIFFRACTION
Experimental protocol
_diffrn_radiation.pdbx_diffrn_protocol
SINGLE WAVELENGTH
Source type
_diffrn_source.source
SEALED TUBE
Source details
_diffrn_source.type
OTHER
Temperature [K]
_diffrn.ambient_temp
110
Detector technology
_diffrn_detector.detector
CCD
Collection date
_diffrn_detector.pdbx_collection_date
2013-05-07
Detector
_diffrn_detector.type
APEX II CCD
Wavelength(s) [Å]
_diffrn_source.pdbx_wavelength_list
1.54
Software
Data reduction
_software.classification
SAINT (2008/2 for Windows)
Data scaling
_software.classification
SAINT
Phasing
_software.classification
PHASER
Refinement
_software.classification
REFMAC (5.7.0029)
General information
Spacegroup name
_symmetry.space_group_name_H-M
P 1 21 1
Unit cell parameters
_cell.length_{a,b,c} _cell.angle_{alpha,beta,gamma}
31.031 59.964 38.017 90.00 93.63 90.00
Wavelength
_diffrn_radiation_wavelength.wavelength
1.54000 Å

Data quality metricsOverallInnerShellOuterShell
Low resolution limit [Å]
_reflns.d_resolution_low _reflns_shell.d_res_low
59.960 59.960 1.830
High resolution limit [Å]
_reflns.d_resolution_high _reflns_shell.d_res_high
1.800 4.980 1.800
Rmerge
_reflns.pdbx_Rmerge_I_obs _reflns_shell.Rmerge_I_obs
0.035 0.049 0.227
  Rmeas - - -
  Rpim - - -
Total number of observations
_reflns.pdbx_number_measured_all
120929 - -
Total number unique
_reflns.number_obs _reflns_shell.number_unique_obs
12978 650 464
<I/σ(I)>
_reflns.pdbx_netI_over_sigmaI _reflns_shell.pdbx_netI_over_sigmaI_obs
18.95 49.69 3.54
Completeness [%]
_reflns.percent_possible_obs _reflns_shell.percent_possible_all
99.9 100.0 100.0
Multiplicity
_reflns.pdbx_redundancy _reflns_shell.pdbx_redundancy
9.1 14.3 5.7
  CC(1/2) - - -

Refinement
PDB entry ID
_entry.id
4PMB
Deposition date
_pdbx_database_status.recvd_initial_deposition_date
2014-05-20
Resolution
_refine.ls_d_res_low _refine.ls_d_res_high
37.9 - 1.800 Å
Rwork/Rfree
_refine.ls_R_factor_R_work _refine.ls_R_factor_R_free
0.1964 / 0.2269
Structure solution method
_refine.pdbx_method_to_determine_struct
MOLECULAR REPLACEMENT
Starting model (for MR)
_refine.pdbx_starting_model
PDB entry 3BDC