Data quality metrics extracted from 3pm8.cif.gz by aB_cif2table1 from BUSTER (Global Phasing Ltd.). See also the PDBx/mmCIF dictionary and a MXLIMS-compatible JSON representation.


Experimental information for 3PM8 at RCSB, PDBe, PDBj

Experiment
Method
_exptl.method
X-RAY DIFFRACTION
Experimental protocol
_diffrn_radiation.pdbx_diffrn_protocol
SINGLE WAVELENGTH
Source type
_diffrn_source.source
ROTATING ANODE
Source details
_diffrn_source.type
RIGAKU FR-E+ SUPERBRIGHT
Temperature [K]
_diffrn.ambient_temp
100
Detector technology
_diffrn_detector.detector
IMAGE PLATE
Collection date
_diffrn_detector.pdbx_collection_date
2010-10-25
Detector
_diffrn_detector.type
RIGAKU RAXIS IV++
Wavelength(s) [Å]
_diffrn_source.pdbx_wavelength_list
1.54178
Software
Data reduction
_software.classification
DENZO (Zbyszek Otwinowski; hkl@hkl-xray.com)
Data scaling
_software.classification
SCALEPACK (Zbyszek Otwinowski; hkl@hkl-xray.com)
Phasing
_software.classification
PHASER
Refinement #1
_software.classification
TNT (Dale E. Tronrud)
Refinement #2
_software.classification
BUSTER (2.8.0)
General information
Spacegroup name
_symmetry.space_group_name_H-M
P 1
Unit cell parameters
_cell.length_{a,b,c} _cell.angle_{alpha,beta,gamma}
47.019 51.378 51.639 68.53 65.75 64.49
Wavelength
_diffrn_radiation_wavelength.wavelength
1.54178 Å

Data quality metricsOverallInnerShellOuterShell
Low resolution limit [Å]
_reflns.d_resolution_low _reflns_shell.d_res_low
50.000 50.000 2.030
High resolution limit [Å]
_reflns.d_resolution_high _reflns_shell.d_res_high
2.000 5.430 2.000
Rmerge
_reflns.pdbx_Rmerge_I_obs _reflns_shell.Rmerge_I_obs
0.041 0.024 0.484
  Rmeas - - -
  Rpim - - -
  Total number of observations - - -
Total number unique
_reflns.number_obs _reflns_shell.number_unique_all
24816 1296 1163
<I/σ(I)>
_reflns.pdbx_netI_over_sigmaI _reflns_shell.meanI_over_sigI_obs
18.80 - 3.46
Completeness [%]
_reflns.percent_possible_obs _reflns_shell.percent_possible_all
95.1 98.7 88.5
Multiplicity
_reflns.pdbx_redundancy _reflns_shell.pdbx_redundancy
4.0 3.9 3.8
  CC(1/2) - - -

Refinement
PDB entry ID
_entry.id
3PM8
Deposition date
_pdbx_database_status.recvd_initial_deposition_date
2010-11-16
Resolution
_refine.ls_d_res_low _refine.ls_d_res_high
26.6 - 2.000 Å
Rwork/Rfree
_refine.ls_R_factor_R_work _refine.ls_R_factor_R_free
0.1990 / 0.2252
Structure solution method
_refine.pdbx_method_to_determine_struct
SAD/MR
Starting model
_refine.pdbx_starting_model
3l19