Data quality metrics extracted from 3pm6.cif.gz by aB_cif2table1 from BUSTER (Global Phasing Ltd.). See also the PDBx/mmCIF dictionary and a MXLIMS-compatible JSON representation.


Experimental information for 3PM6 at RCSB, PDBe, PDBj

Experiment
Method
_exptl.method
X-RAY DIFFRACTION
Experimental protocol
_diffrn_radiation.pdbx_diffrn_protocol
SINGLE WAVELENGTH
Source type
_diffrn_source.source
ROTATING ANODE
Source details
_diffrn_source.type
RIGAKU MICROMAX-007 HF
Temperature [K]
_diffrn.ambient_temp
100
Detector technology
_diffrn_detector.detector
CCD
Collection date
_diffrn_detector.pdbx_collection_date
2010-10-14
Detector
_diffrn_detector.type
RIGAKU SATURN 944
Wavelength(s) [Å]
_diffrn_source.pdbx_wavelength_list
1.5418
Software
Data collection
_software.classification
StructureStudio
Data reduction
_software.classification
XDS
Data scaling
_software.classification
XSCALE (Wolfgang Kabsch)
Phasing
_software.classification
PHASER (EP; Randy J. Read; cimr-phaser@lists.cam.ac.uk)
Refinement
_software.classification
REFMAC (Garib N. Murshudov; garib@ysbl.york.ac.uk)
General information
Spacegroup name
_symmetry.space_group_name_H-M
P 1 21 1
Unit cell parameters
_cell.length_{a,b,c} _cell.angle_{alpha,beta,gamma}
57.91 77.77 68.32 90.00 93.71 90.00
Wavelength
_diffrn_radiation_wavelength.wavelength
1.54180 Å

Data quality metricsOverallInnerShellOuterShell
Low resolution limit [Å]
_reflns.d_resolution_low _reflns_shell.d_res_low
50.000 50.000 2.260
High resolution limit [Å]
_reflns.d_resolution_high _reflns_shell.d_res_high
2.200 9.840 2.200
Rmerge
_reflns.pdbx_Rmerge_I_obs _reflns_shell.Rmerge_I_obs
0.104 0.067 0.478
  Rmeas - - -
  Rpim - - -
Total number of observations
_reflns_shell.number_measured_obs
- 2380 11227
Total number unique
_reflns.number_obs _reflns_shell.number_unique_obs _reflns_shell.number_unique_all
30048 350 2254
<I/σ(I)>
_reflns.pdbx_netI_over_sigmaI _reflns_shell.meanI_over_sigI_obs
12.96 29.50 3.70
Completeness [%]
_reflns.percent_possible_obs _reflns_shell.percent_possible_all
97.5 95.6 82.8
Multiplicity
_reflns.pdbx_redundancy _reflns_shell.pdbx_redundancy
7.3 - 6.0
  CC(1/2) - - -

Refinement
PDB entry ID
_entry.id
3PM6
Deposition date
_pdbx_database_status.recvd_initial_deposition_date
2010-11-16
Resolution
_refine.ls_d_res_low _refine.ls_d_res_high
50.0 - 2.200 Å
Rwork/Rfree
_refine.ls_R_factor_R_work _refine.ls_R_factor_R_free
0.1978 / 0.2369
Structure solution method
_refine.pdbx_method_to_determine_struct
SAD WITH MR
Starting model
_refine.pdbx_starting_model
2isv