Data quality metrics extracted from 6pk3.cif.gz by aB_cif2table1 from BUSTER (Global Phasing Ltd.). See also the PDBx/mmCIF dictionary and a MXLIMS-compatible JSON representation.


Experimental information for 6PK3 at RCSB, PDBe, PDBj

Experiment
Method
_exptl.method
X-RAY DIFFRACTION
Experimental protocol
_diffrn_radiation.pdbx_diffrn_protocol
SINGLE WAVELENGTH
Source type
_diffrn_source.source
ROTATING ANODE
Source details
_diffrn_source.type
RIGAKU RUH2R
Temperature [K]
_diffrn.ambient_temp
295
Detector technology
_diffrn_detector.detector
IMAGE PLATE
Collection date
_diffrn_detector.pdbx_collection_date
2002-03-14
Detector
_diffrn_detector.type
RIGAKU RAXIS IV++
Wavelength(s) [Å]
_diffrn_source.pdbx_wavelength_list
1.54
Software
Data reduction
_software.classification
DENZO (0.95)
Data scaling
_software.classification
SCALEPACK (1.6.1)
Phasing
_software.classification
SOLVE (2.02)
Refinement
_software.classification
PHENIX (1.15-2)
General information
Spacegroup name
_symmetry.space_group_name_H-M
P 21 21 2
Unit cell parameters
_cell.length_{a,b,c} _cell.angle_{alpha,beta,gamma}
139.179 62.289 97.013 90.0 90.0 90.0
Wavelength
_diffrn_radiation_wavelength.wavelength
1.54000 Å

Data quality metricsOverallInnerShellOuterShell
Low resolution limit [Å]
_reflns.d_resolution_low _reflns_shell.d_res_low
22.600 30.000 2.280
High resolution limit [Å]
_reflns.d_resolution_high _reflns_shell.d_res_high
2.180 4.740 2.200
Rmerge
_reflns.pdbx_Rmerge_I_obs _reflns_shell.Rmerge_I_obs
0.077 0.042 0.209
  Rmeas - - -
  Rpim - - -
  Total number of observations - - -
Total number unique
_reflns.number_obs _reflns_shell.number_unique_obs
41368 4648 2127
<I/σ(I)>
_reflns.pdbx_netI_over_sigmaI
15.40 - -
Completeness [%]
_reflns.percent_possible_obs _reflns_shell.percent_possible_all
92.1 97.3 48.2
Multiplicity
_reflns.pdbx_redundancy
5.0 - -
  CC(1/2) - - -

Refinement
PDB entry ID
_entry.id
6PK3
Deposition date
_pdbx_database_status.recvd_initial_deposition_date
2019-06-28
Resolution
_refine.ls_d_res_low _refine.ls_d_res_high
22.6 - 2.180 Å
Rwork/Rfree
_refine.ls_R_factor_R_work _refine.ls_R_factor_R_free
0.1393 / 0.1703
Structure solution method
_refine.pdbx_method_to_determine_struct
MIR