Data quality metrics extracted from 9phm.cif.gz by aB_cif2table1 from BUSTER (Global Phasing Ltd.). See also the PDBx/mmCIF dictionary and a MXLIMS-compatible JSON representation.


Experimental information for 9PHM at RCSB, PDBe, PDBj

Experiment
Method
_exptl.method
X-RAY DIFFRACTION
Experimental protocol
_diffrn_radiation.pdbx_diffrn_protocol
SINGLE WAVELENGTH
Source type
_diffrn_source.source
SYNCHROTRON
Source details
_diffrn_source.type
APS BEAMLINE 17-ID
Synchrotron site
_diffrn_source.pdbx_synchrotron_site
APS
Beamline
_diffrn_source.pdbx_synchrotron_beamline
17-ID
Temperature [K]
_diffrn.ambient_temp
100
Detector technology
_diffrn_detector.detector
PIXEL
Collection date
_diffrn_detector.pdbx_collection_date
2025-02-21
Detector
_diffrn_detector.type
DECTRIS EIGER X 9M
Wavelength(s) [Å]
_diffrn_source.pdbx_wavelength_list
0.920174
Software
Data reduction
_software.classification
autoPROC
Data scaling
_software.classification
STARANISO
Phasing
_software.classification
PHASER
Refinement
_software.classification
PHENIX (1.21.2_5419)
General information
Spacegroup name
_symmetry.space_group_name_H-M
P 1
Unit cell parameters
_cell.length_{a,b,c} _cell.angle_{alpha,beta,gamma}
67.486 68.579 70.075 101.819 97.761 101.015
Wavelength
_diffrn_radiation_wavelength.wavelength
0.92017 Å

Data quality metricsOverallInnerShellOuterShell
Low resolution limit [Å]
_reflns.d_resolution_low _reflns_shell.d_res_low
67.453 67.453 7.874
High resolution limit [Å]
_reflns.d_resolution_high _reflns_shell.d_res_high
6.550 14.372 6.553
  Rmerge - - -
  Rmeas - - -
  Rpim - - -
  Total number of observations - - -
Total number unique
_reflns.number_obs _reflns_shell.number_unique_obs
1497 214 214
<I/σ(I)>
_reflns.pdbx_netI_over_sigmaI
3.30 - -
Completeness [%]
_reflns.percent_possible_obs
80.5 - -
Multiplicity
_reflns.pdbx_redundancy
1.9 - -
CC(1/2)
_reflns.pdbx_CC_half _reflns_shell.pdbx_CC_half
0.647 0.577 0.428

Refinement
PDB entry ID
_entry.id
9PHM
Deposition date
_pdbx_database_status.recvd_initial_deposition_date
2025-07-09
Resolution
_refine.ls_d_res_low _refine.ls_d_res_high
65.4 - 6.550 Å
Rwork/Rfree
_refine.ls_R_factor_R_work _refine.ls_R_factor_R_free
0.1613 / 0.1727
Structure solution method
_refine.pdbx_method_to_determine_struct
MOLECULAR REPLACEMENT
Starting model (for MR)
_refine.pdbx_starting_model
WARNING: no starting model (for MR) given