Experiment | |
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Method _exptl.method | X-RAY DIFFRACTION The method used in the experiment. |
Experimental protocol _diffrn_radiation.pdbx_diffrn_protocol | MAD SINGLE WAVELENGTH, LAUE, or MAD. |
Source type _diffrn_source.source | SYNCHROTRON The general class of the radiation source. |
Source details _diffrn_source.type | NSLS BEAMLINE X6A The make, model or name of the source of radiation. |
Synchrotron site _diffrn_source.pdbx_synchrotron_site | NSLS Synchrotron site. |
Beamline _diffrn_source.pdbx_synchrotron_beamline | X6A Synchrotron beamline. |
Temperature [K] _diffrn.ambient_temp | 100 The mean temperature in kelvins at which the intensities were |
Detector technology _diffrn_detector.detector | CCD The general class of the radiation detector. |
Collection date _diffrn_detector.pdbx_collection_date | 2011-03-23 The date of data collection. |
Detector _diffrn_detector.type | ADSC QUANTUM 210 The make, model or name of the detector device used. |
Wavelength(s) [Å] _diffrn_source.pdbx_wavelength_list | 0.900, 0.9787, 0.9792, 0.9700, 1.0053, 1.0089 Comma separated list of wavelengths or wavelength range. |
Software | |
Data reduction _software.classification | XDS (Jan 26, 2018) The classification of the program according to its |
Data scaling _software.classification | XSCALE (Jan 26, 2018) The classification of the program according to its |
Phasing _software.classification | PHENIX (1.14_3260) The classification of the program according to its |
Refinement _software.classification | PHENIX (1.14_3260: ???) The classification of the program according to its |
General information | |
Spacegroup name _symmetry.space_group_name_H-M | P 61 2 2 Hermann-Mauguin space-group symbol. Note that the |
Unit cell parameters _cell.length_{a,b,c} _cell.angle_{alpha,beta,gamma} | 102.12 Unit-cell length a corresponding to the structure reported in 102.12 Unit-cell length b corresponding to the structure reported in 92.20 Unit-cell length c corresponding to the structure reported in 90.0 Unit-cell angle alpha of the reported structure in degrees. 90.0 Unit-cell angle beta of the reported structure in degrees. 120.0 Unit-cell angle gamma of the reported structure in degrees. |
Wavelength _diffrn_radiation_wavelength.wavelength | 0.90000 The radiation wavelength in angstroms. 0.97870 The radiation wavelength in angstroms. 0.97920 The radiation wavelength in angstroms. 0.97000 The radiation wavelength in angstroms. 1.00530 The radiation wavelength in angstroms. 1.00890 ÅThe radiation wavelength in angstroms. |
Data quality metrics | Overall | OuterShell |
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Low resolution limit [Å] _reflns.d_resolution_low _reflns_shell.d_res_low | 20.000 The largest value in angstroms for the interplanar spacings | 2.380 The highest value in angstroms for the interplanar spacings |
High resolution limit [Å] _reflns.d_resolution_high _reflns_shell.d_res_high | 2.300 The smallest value in angstroms for the interplanar spacings | 2.300 The smallest value in angstroms for the interplanar spacings |
Rmerge _reflns.pdbx_Rmerge_I_obs _reflns_shell.Rmerge_I_obs | 0.058 The R value for merging intensities satisfying the observed | 0.990 The value of Rmerge(I) for reflections classified as 'observed' |
Rmeas _reflns.pdbx_Rrim_I_all _reflns_shell.pdbx_Rrim_I_all | 0.058 The redundancy-independent merging R factor value Rrim, | 1.000 The redundancy-independent merging R factor value Rrim, |
Rpim _reflns.pdbx_Rpim_I_all _reflns_shell.pdbx_Rpim_I_all | 0.007 The precision-indicating merging R factor value Rpim, | 0.145 The precision-indicating merging R factor value Rpim, |
Total number of observations | - | - |
Total number unique _reflns.number_obs _reflns_shell.number_unique_obs | 12866 The number of reflections in the REFLN list (not the DIFFRN_REFLN | 1237 The total number of measured reflections classified as 'observed' |
<I/σ(I)> _reflns.pdbx_netI_over_sigmaI | 81.60 The mean of the ratio of the intensities to their | - |
Completeness [%] _reflns.percent_possible_obs _reflns_shell.percent_possible_all | 98.3 The percentage of geometrically possible reflections represented | 97.4 The percentage of geometrically possible reflections represented |
Multiplicity _reflns.pdbx_redundancy _reflns_shell.pdbx_redundancy | 77.0 Overall redundancy for this data set. | 46.2 Redundancy for the current shell. |
CC(1/2) _reflns.pdbx_CC_half _reflns_shell.pdbx_CC_half | 1.000 The Pearson's correlation coefficient expressed as a decimal value | 0.949 The Pearson's correlation coefficient expressed as a decimal value |
Refinement | |
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PDB entry ID _entry.id | 6PGV |
Deposition date _pdbx_database_status.recvd_initial_deposition_date | 2019-06-24 |
Resolution _refine.ls_d_res_low _refine.ls_d_res_high | 19.8 - 2.300 Å |
Rwork/Rfree _refine.ls_R_factor_R_work _refine.ls_R_factor_R_free | 0.2010 / 0.2240 |
Structure solution method _refine.pdbx_method_to_determine_struct | MAD |