Data quality metrics extracted from 9pf8.cif.gz by aB_cif2table1 from BUSTER (Global Phasing Ltd.). See also the PDBx/mmCIF dictionary and a MXLIMS-compatible JSON representation.


Experimental information for 9PF8 at RCSB, PDBe, PDBj

Experiment
Method
_exptl.method
X-RAY DIFFRACTION
Experimental protocol
_diffrn_radiation.pdbx_diffrn_protocol
SINGLE WAVELENGTH
Source type
_diffrn_source.source
SYNCHROTRON
Source details
_diffrn_source.type
APS BEAMLINE 17-ID
Synchrotron site
_diffrn_source.pdbx_synchrotron_site
APS
Beamline
_diffrn_source.pdbx_synchrotron_beamline
17-ID
Temperature [K]
_diffrn.ambient_temp
100
Detector technology
_diffrn_detector.detector
PIXEL
Collection date
_diffrn_detector.pdbx_collection_date
2024-12-13
Detector
_diffrn_detector.type
DECTRIS EIGER X 9M
Wavelength(s) [Å]
_diffrn_source.pdbx_wavelength_list
0.920208
Software
Data reduction
_software.classification
autoPROC
Data scaling
_software.classification
STARANISO
Phasing
_software.classification
PHASER
Refinement
_software.classification
PHENIX (1.21.2_5419)
General information
Spacegroup name
_symmetry.space_group_name_H-M
P 1
Unit cell parameters
_cell.length_{a,b,c} _cell.angle_{alpha,beta,gamma}
68.39 68.45 68.55 98.479 95.509 108.602
Wavelength
_diffrn_radiation_wavelength.wavelength
0.92021 Å

Data quality metricsOverallInnerShellOuterShell
Low resolution limit [Å]
_reflns.d_resolution_low _reflns_shell.d_res_low
67.007 67.007 7.129
High resolution limit [Å]
_reflns.d_resolution_high _reflns_shell.d_res_high
6.100 14.420 6.104
  Rmerge - - -
  Rmeas - - -
  Rpim - - -
  Total number of observations - - -
Total number unique
_reflns.number_obs _reflns_shell.number_unique_obs
1829 203 203
<I/σ(I)>
_reflns.pdbx_netI_over_sigmaI
3.90 - -
Completeness [%]
_reflns.percent_possible_obs
83.0 - -
Multiplicity
_reflns.pdbx_redundancy
2.2 - -
CC(1/2)
_reflns.pdbx_CC_half _reflns_shell.pdbx_CC_half
0.627 0.513 0.228

Refinement
PDB entry ID
_entry.id
9PF8
Deposition date
_pdbx_database_status.recvd_initial_deposition_date
2025-07-03
Resolution
_refine.ls_d_res_low _refine.ls_d_res_high
51.2 - 6.100 Å
Rwork/Rfree
_refine.ls_R_factor_R_work _refine.ls_R_factor_R_free
0.2816 / 0.2966
Structure solution method
_refine.pdbx_method_to_determine_struct
MOLECULAR REPLACEMENT
Starting model (for MR)
_refine.pdbx_starting_model
WARNING: no starting model (for MR) given