Data quality metrics extracted from 5pe2.cif.gz by aB_cif2table1 from BUSTER (Global Phasing Ltd.). See also the PDBx/mmCIF dictionary and a MXLIMS-compatible JSON representation.


Experimental information for 5PE2 at RCSB, PDBe, PDBj

Experiment
Method
_exptl.method
X-RAY DIFFRACTION
Experimental protocol
_diffrn_radiation.pdbx_diffrn_protocol
SINGLE WAVELENGTH
Source type
_diffrn_source.source
SYNCHROTRON
Source details
_diffrn_source.type
DIAMOND BEAMLINE I04-1
Synchrotron site
_diffrn_source.pdbx_synchrotron_site
Diamond
Beamline
_diffrn_source.pdbx_synchrotron_beamline
I04-1
Temperature [K]
_diffrn.ambient_temp
100
Detector technology
_diffrn_detector.detector
PIXEL
Collection date
_diffrn_detector.pdbx_collection_date
2013-03-10
Detector
_diffrn_detector.type
DECTRIS PILATUS 2M
Wavelength(s) [Å]
_diffrn_source.pdbx_wavelength_list
0.9200
Software
Data reduction
_software.classification
XDS
Data scaling
_software.classification
Aimless (0.1.29; 21/08/12; Phil Evans)
Phasing
_software.classification
REFMAC
Refinement
_software.classification
REFMAC (5.8.0131; Garib N. Murshudov; garib@ysbl.york.ac.uk)
General information
Spacegroup name
_symmetry.space_group_name_H-M
C 2 2 21
Unit cell parameters
_cell.length_{a,b,c} _cell.angle_{alpha,beta,gamma}
82.149 96.646 57.919 90.0 90.0 90.0
Wavelength
_diffrn_radiation_wavelength.wavelength
0.92000 Å

Data quality metricsOverallInnerShellOuterShell
Low resolution limit [Å]
_reflns.d_resolution_low _reflns_shell.d_res_low
28.960 28.960 1.740
High resolution limit [Å]
_reflns.d_resolution_high _reflns_shell.d_res_high
1.710 8.710 1.710
Rmerge
_reflns.pdbx_Rmerge_I_obs _reflns_shell.Rmerge_I_obs
0.056 0.037 0.853
Rmeas
_reflns.pdbx_Rrim_I_all _reflns_shell.pdbx_Rrim_I_all
0.061 0.040 0.939
Rpim
_reflns.pdbx_Rpim_I_all _reflns_shell.pdbx_Rpim_I_all
0.023 0.016 0.387
Total number of observations
_reflns.pdbx_number_measured_all _reflns_shell.number_measured_all
162294 1360 7284
Total number unique
_reflns.number_obs _reflns_shell.number_unique_all
24924 223 1349
<I/σ(I)>
_reflns.pdbx_netI_over_sigmaI _reflns_shell.pdbx_netI_over_sigmaI_obs
17.20 51.30 1.90
Completeness [%]
_reflns.percent_possible_obs _reflns_shell.percent_possible_all
98.4 97.5 95.5
Multiplicity
_reflns.pdbx_redundancy _reflns_shell.pdbx_redundancy
6.5 6.1 5.4
CC(1/2)
_reflns.pdbx_CC_half _reflns_shell.pdbx_CC_half
0.999 0.999 0.843

Refinement
PDB entry ID
_entry.id
5PE2
Deposition date
_pdbx_database_status.recvd_initial_deposition_date
2017-02-03
Resolution
_refine.ls_d_res_low _refine.ls_d_res_high
29.0 - 1.710 Å
Rwork/Rfree
_refine.ls_R_factor_R_work _refine.ls_R_factor_R_free
0.1904 / 0.2207
Structure solution method
_refine.pdbx_method_to_determine_struct
FOURIER SYNTHESIS
Starting model
_refine.pdbx_starting_model
3G0L