Data quality metrics extracted from 4pce.cif.gz by aB_cif2table1 from BUSTER (Global Phasing Ltd.). See also the PDBx/mmCIF dictionary and a MXLIMS-compatible JSON representation.


Experimental information for 4PCE at RCSB, PDBe, PDBj

Experiment
Method
_exptl.method
X-RAY DIFFRACTION
Experimental protocol
_diffrn_radiation.pdbx_diffrn_protocol
SINGLE WAVELENGTH
Source type
_diffrn_source.source
SYNCHROTRON
Source details
_diffrn_source.type
SLS BEAMLINE X06SA
Synchrotron site
_diffrn_source.pdbx_synchrotron_site
SLS
Beamline
_diffrn_source.pdbx_synchrotron_beamline
X06SA
Temperature [K]
_diffrn.ambient_temp
100
Detector technology
_diffrn_detector.detector
PIXEL
Collection date
_diffrn_detector.pdbx_collection_date
2014-03-28
Detector
_diffrn_detector.type
PSI PILATUS 6M
Wavelength(s) [Å]
_diffrn_source.pdbx_wavelength_list
0.99989
Software
Data scaling #1
_software.classification
SCALA (3.3.21)
Data scaling #2
_software.classification
XDS (VERSION January 10, 2014 BUILT=20140115)
Phasing
_software.classification
PHASER (2.5.6)
Refinement
_software.classification
PHENIX (phenix.refine: 1.9_1678)
General information
Spacegroup name
_symmetry.space_group_name_H-M
P 21 21 21
Unit cell parameters
_cell.length_{a,b,c} _cell.angle_{alpha,beta,gamma}
37.590 44.279 78.371 90.0 90.0 90.0
Wavelength
_diffrn_radiation_wavelength.wavelength
0.99989 Å

Data quality metricsOverallInnerShellOuterShell
Low resolution limit [Å]
_reflns.d_resolution_low _reflns_shell.d_res_low
44.279 44.279 1.360
High resolution limit [Å]
_reflns.d_resolution_high _reflns_shell.d_res_high
1.293 4.090 1.293
Rmerge
_reflns.pdbx_Rsym_value _reflns_shell.Rmerge_I_obs
0.085 0.063 0.302
Rmeas
_reflns.pdbx_Rrim_I_all
0.089 - -
Rpim
_reflns.pdbx_Rpim_I_all _reflns_shell.pdbx_Rpim_I_all
0.026 0.019 0.097
Total number of observations
_reflns.pdbx_number_measured_all _reflns_shell.number_measured_all
404141 12673 47814
Total number unique
_reflns.number_obs _reflns_shell.number_unique_all
33222 1196 4513
<I/σ(I)>
_reflns.pdbx_netI_over_sigmaI _reflns_shell.meanI_over_sigI_obs
21.20 8.40 2.20
Completeness [%]
_reflns.percent_possible_obs _reflns_shell.percent_possible_all
99.1 99.9 93.9
Multiplicity
_reflns.pdbx_redundancy _reflns_shell.pdbx_redundancy
12.2 10.6 10.6
  CC(1/2) - - -

Refinement
PDB entry ID
_entry.id
4PCE
Deposition date
_pdbx_database_status.recvd_initial_deposition_date
2014-04-15
Resolution
_refine.ls_d_res_low _refine.ls_d_res_high
39.2 - 1.293 Å
Rwork/Rfree
_refine.ls_R_factor_R_work _refine.ls_R_factor_R_free
0.1366 / 0.1637
Structure solution method
_refine.pdbx_method_to_determine_struct
MOLECULAR REPLACEMENT
Starting model (for MR)
_refine.pdbx_starting_model
WARNING: no starting model (for MR) given