Experiment | |
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Method _exptl.method | X-RAY DIFFRACTION The method used in the experiment. |
Experimental protocol _diffrn_radiation.pdbx_diffrn_protocol | SINGLE WAVELENGTH SINGLE WAVELENGTH, LAUE, or MAD. |
Source type _diffrn_source.source | ROTATING ANODE The general class of the radiation source. |
Source details _diffrn_source.type | RIGAKU FR-E SUPERBRIGHT The make, model or name of the source of radiation. |
Temperature [K] _diffrn.ambient_temp | 100 The mean temperature in kelvins at which the intensities were |
Detector technology _diffrn_detector.detector | IMAGE PLATE The general class of the radiation detector. |
Collection date _diffrn_detector.pdbx_collection_date | 2015-01-14 The date of data collection. |
Detector _diffrn_detector.type | RIGAKU RAXIS IV The make, model or name of the detector device used. |
Wavelength(s) [Å] _diffrn_source.pdbx_wavelength_list | 1.5418 Comma separated list of wavelengths or wavelength range. |
Software | |
Data reduction _software.classification | XDS The classification of the program according to its |
Data scaling _software.classification | SCALA (0.7.2) The classification of the program according to its |
Phasing _software.classification | PHASER The classification of the program according to its |
Refinement _software.classification | PHENIX (1.14_3211) The classification of the program according to its |
General information | |
Spacegroup name _symmetry.space_group_name_H-M | P 21 3 Hermann-Mauguin space-group symbol. Note that the |
Unit cell parameters _cell.length_{a,b,c} _cell.angle_{alpha,beta,gamma} | 96.228 Unit-cell length a corresponding to the structure reported in 96.228 Unit-cell length b corresponding to the structure reported in 96.228 Unit-cell length c corresponding to the structure reported in 90.0 Unit-cell angle alpha of the reported structure in degrees. 90.0 Unit-cell angle beta of the reported structure in degrees. 90.0 Unit-cell angle gamma of the reported structure in degrees. |
Wavelength _diffrn_radiation_wavelength.wavelength | 1.54180 ÅThe radiation wavelength in angstroms. |
Data quality metrics | Overall | InnerShell | OuterShell |
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Low resolution limit [Å] _reflns.d_resolution_low _reflns_shell.d_res_low | 48.110 The largest value in angstroms for the interplanar spacings | 48.110 The highest value in angstroms for the interplanar spacings | 2.050 The highest value in angstroms for the interplanar spacings |
High resolution limit [Å] _reflns.d_resolution_high _reflns_shell.d_res_high | 2.000 The smallest value in angstroms for the interplanar spacings | 8.950 The smallest value in angstroms for the interplanar spacings | 2.000 The smallest value in angstroms for the interplanar spacings |
Rmerge _reflns.pdbx_Rmerge_I_obs _reflns_shell.Rmerge_I_obs | 0.121 The R value for merging intensities satisfying the observed | 0.021 The value of Rmerge(I) for reflections classified as 'observed' | 1.243 The value of Rmerge(I) for reflections classified as 'observed' |
Rmeas _reflns.pdbx_Rrim_I_all _reflns_shell.pdbx_Rrim_I_all | 0.143 The redundancy-independent merging R factor value Rrim, | 0.026 The redundancy-independent merging R factor value Rrim, | 1.480 The redundancy-independent merging R factor value Rrim, |
Rpim _reflns.pdbx_Rpim_I_all _reflns_shell.pdbx_Rpim_I_all | 0.074 The precision-indicating merging R factor value Rpim, | 0.015 The precision-indicating merging R factor value Rpim, | 0.793 The precision-indicating merging R factor value Rpim, |
Total number of observations _reflns.pdbx_number_measured_all _reflns_shell.number_measured_all | 72097 Total number of measured reflections. | 691 The total number of reflections measured for this | 4962 The total number of reflections measured for this |
Total number unique _reflns.number_obs _reflns_shell.number_unique_obs | 20275 The number of reflections in the REFLN list (not the DIFFRN_REFLN | 247 The total number of measured reflections classified as 'observed' | 1471 The total number of measured reflections classified as 'observed' |
<I/σ(I)> _reflns.pdbx_netI_over_sigmaI _reflns_shell.pdbx_netI_over_sigmaI_obs | 8.50 The mean of the ratio of the intensities to their | 30.80 The mean of the ratio of the intensities to their | 1.00 The mean of the ratio of the intensities to their |
Completeness [%] _reflns.percent_possible_obs _reflns_shell.percent_possible_all | 99.6 The percentage of geometrically possible reflections represented | 94.0 The percentage of geometrically possible reflections represented | 99.6 The percentage of geometrically possible reflections represented |
Multiplicity _reflns.pdbx_redundancy _reflns_shell.pdbx_redundancy | 3.6 Overall redundancy for this data set. | 2.8 Redundancy for the current shell. | 3.4 Redundancy for the current shell. |
CC(1/2) _reflns.pdbx_CC_half _reflns_shell.pdbx_CC_half | 0.996 The Pearson's correlation coefficient expressed as a decimal value | 0.999 The Pearson's correlation coefficient expressed as a decimal value | 0.372 The Pearson's correlation coefficient expressed as a decimal value |
Refinement | |
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PDB entry ID _entry.id | 6P9P |
Deposition date _pdbx_database_status.recvd_initial_deposition_date | 2019-06-10 |
Resolution _refine.ls_d_res_low _refine.ls_d_res_high | 43.0 - 2.000 Å |
Rwork/Rfree _refine.ls_R_factor_R_work _refine.ls_R_factor_R_free | 0.1863 / 0.2232 |
Structure solution method _refine.pdbx_method_to_determine_struct | MOLECULAR REPLACEMENT |
Starting model (for MR) _refine.pdbx_starting_model | 1LXA |