Data quality metrics extracted from 3p9l.cif.gz by aB_cif2table1 from BUSTER (Global Phasing Ltd.). See also the PDBx/mmCIF dictionary and a MXLIMS-compatible JSON representation.


Experimental information for 3P9L at RCSB, PDBe, PDBj

Experiment
Method
_exptl.method
X-RAY DIFFRACTION
Experimental protocol
_diffrn_radiation.pdbx_diffrn_protocol
SINGLE WAVELENGTH
Source type
_diffrn_source.source
ROTATING ANODE
Temperature [K]
_diffrn.ambient_temp
100
Detector technology
_diffrn_detector.detector
IMAGE PLATE
Collection date
_diffrn_detector.pdbx_collection_date
2008-08-13
Detector
_diffrn_detector.type
RIGAKU RAXIS
Wavelength(s) [Å]
_diffrn_source.pdbx_wavelength_list
1.54
Software
Data scaling
_software.classification
XSCALE (Wolfgang Kabsch)
Phasing
_software.classification
PHASER (Randy J. Read; cimr-phaser@lists.cam.ac.uk)
Refinement #1
_software.classification
REFMAC (Garib N. Murshudov; garib@ysbl.york.ac.uk)
Refinement #2
_software.classification
PHENIX (1.6.1_357)
General information
Spacegroup name
_symmetry.space_group_name_H-M
P 1 21 1
Unit cell parameters
_cell.length_{a,b,c} _cell.angle_{alpha,beta,gamma}
66.99 90.41 89.74 90.00 111.71 90.00
Wavelength
_diffrn_radiation_wavelength.wavelength
1.54000 Å

Data quality metricsOverallInnerShellOuterShell
Low resolution limit [Å]
_reflns.d_resolution_low _reflns_shell.d_res_low
100.000 100.000 2.100
High resolution limit [Å]
_reflns.d_resolution_high _reflns_shell.d_res_high
2.000 10.000 2.000
Rmerge
_reflns.pdbx_Rmerge_I_obs _reflns_shell.Rmerge_I_obs
0.048 0.021 0.253
Rmeas
_reflns_shell.pdbx_Rrim_I_all
- 0.025 0.291
  Rpim - - -
Total number of observations
_reflns_shell.number_measured_obs
- 1949 36459
Total number unique
_reflns.number_obs _reflns_shell.number_unique_obs
65977 514 8871
<I/σ(I)>
_reflns.pdbx_netI_over_sigmaI _reflns_shell.meanI_over_sigI_obs
19.12 42.80 5.70
Completeness [%]
_reflns.percent_possible_obs _reflns_shell.percent_possible_all
98.1 90.7 97.1
  Multiplicity - - -
  CC(1/2) - - -

Refinement
PDB entry ID
_entry.id
3P9L
Deposition date
_pdbx_database_status.recvd_initial_deposition_date
2010-10-18
Resolution
_refine.ls_d_res_low _refine.ls_d_res_high
31.0 - 2.000 Å
Rwork/Rfree
_refine.ls_R_factor_R_work _refine.ls_R_factor_R_free
0.1861 / 0.2434
Structure solution method
_refine.pdbx_method_to_determine_struct
MOLECULAR REPLACEMENT
Starting model (for MR)
_refine.pdbx_starting_model
1vac