Data quality metrics extracted from 6p41.cif.gz by aB_cif2table1 from BUSTER (Global Phasing Ltd.). See also the PDBx/mmCIF dictionary and a MXLIMS-compatible JSON representation.


Experimental information for 6P41 at RCSB, PDBe, PDBj

Experiment
Method
_exptl.method
X-RAY DIFFRACTION
Experimental protocol
_diffrn_radiation.pdbx_diffrn_protocol
SINGLE WAVELENGTH
Source type
_diffrn_source.source
SYNCHROTRON
Source details
_diffrn_source.type
APS BEAMLINE 24-ID-C
Synchrotron site
_diffrn_source.pdbx_synchrotron_site
APS
Beamline
_diffrn_source.pdbx_synchrotron_beamline
24-ID-C
Temperature [K]
_diffrn.ambient_temp
100
Detector technology
_diffrn_detector.detector
PIXEL
Collection date
_diffrn_detector.pdbx_collection_date
2017-06-06
Detector
_diffrn_detector.type
DECTRIS PILATUS 6M-F
Wavelength(s) [Å]
_diffrn_source.pdbx_wavelength_list
0.97920
Software
Data collection
_software.classification
HKL-2000
Data scaling
_software.classification
HKL-2000
Refinement
_software.classification
PHENIX (1.15.2_3472)
General information
Spacegroup name
_symmetry.space_group_name_H-M
P 1 21 1
Unit cell parameters
_cell.length_{a,b,c} _cell.angle_{alpha,beta,gamma}
45.803 112.070 88.327 90.00 104.64 90.00
Wavelength
_diffrn_radiation_wavelength.wavelength
0.97920 Å

Data quality metricsOverallInnerShellOuterShell
Low resolution limit [Å]
_reflns.d_resolution_low _reflns_shell.d_res_low
50.000 50.000 2.950
High resolution limit [Å]
_reflns.d_resolution_high _reflns_shell.d_res_high
2.900 7.860 2.900
Rmerge
_reflns.pdbx_Rmerge_I_obs _reflns_shell.Rmerge_I_obs
0.175 0.079 1.174
Rmeas
_reflns.pdbx_Rrim_I_all _reflns_shell.pdbx_Rrim_I_all
0.191 0.087 1.341
Rpim
_reflns.pdbx_Rpim_I_all _reflns_shell.pdbx_Rpim_I_all
0.076 0.035 0.625
Total number of observations
_reflns.pdbx_number_measured_all
109662 - -
Total number unique
_reflns.number_obs _reflns_shell.number_unique_obs
18648 992 737
<I/σ(I)>
_reflns.pdbx_netI_over_sigmaI
3.90 - -
Completeness [%]
_reflns.percent_possible_obs _reflns_shell.percent_possible_all
96.2 98.9 76.6
Multiplicity
_reflns.pdbx_redundancy _reflns_shell.pdbx_redundancy
5.9 6.4 3.5
CC(1/2)
_reflns_shell.pdbx_CC_half
- 0.992 0.562

Refinement
PDB entry ID
_entry.id
6P41
Deposition date
_pdbx_database_status.recvd_initial_deposition_date
2019-05-25
Resolution
_refine.ls_d_res_low _refine.ls_d_res_high
44.3 - 2.900 Å
Rwork/Rfree
_refine.ls_R_factor_R_work _refine.ls_R_factor_R_free
0.2372 / 0.2726
Structure solution method
_refine.pdbx_method_to_determine_struct
MOLECULAR REPLACEMENT
Starting model (for MR)
_refine.pdbx_starting_model
5CIH