Data quality metrics extracted from 8p0d.cif.gz by aB_cif2table1 from BUSTER (Global Phasing Ltd.). See also the PDBx/mmCIF dictionary and a MXLIMS-compatible JSON representation.


Experimental information for 8P0D at RCSB, PDBe, PDBj

Experiment
Method
_exptl.method
X-RAY DIFFRACTION
Experimental protocol
_diffrn_radiation.pdbx_diffrn_protocol
SINGLE WAVELENGTH
Source type
_diffrn_source.source
SYNCHROTRON
Source details
_diffrn_source.type
DIAMOND BEAMLINE I04
Synchrotron site
_diffrn_source.pdbx_synchrotron_site
Diamond
Beamline
_diffrn_source.pdbx_synchrotron_beamline
I04
Temperature [K]
_diffrn.ambient_temp
100
Detector technology
_diffrn_detector.detector
PIXEL
Collection date
_diffrn_detector.pdbx_collection_date
2021-11-27
Detector
_diffrn_detector.type
DECTRIS EIGER2 X 16M
Wavelength(s) [Å]
_diffrn_source.pdbx_wavelength_list
0.91001
Software
Data reduction
_software.classification
xia2 (3.8.dev0)
Data scaling
_software.classification
DIALS (3.dev.615-gfee771ddc)
Phasing
_software.classification
BUSTER (2.10.4)
Refinement
_software.classification
BUSTER (2.10.4)
General information
Spacegroup name
_symmetry.space_group_name_H-M
C 2 2 21
Unit cell parameters
_cell.length_{a,b,c} _cell.angle_{alpha,beta,gamma}
82.588 111.824 62.551 90.0 90.0 90.0
Wavelength
_diffrn_radiation_wavelength.wavelength
0.91001 Å

Data quality metricsOverall
Low resolution limit [Å]
_reflns.d_resolution_low
1.330
High resolution limit [Å]
_reflns.d_resolution_high
1.310
Rmerge
_reflns.pdbx_Rmerge_I_obs
0.139
Rmeas
_reflns.pdbx_Rrim_I_all
0.145
Rpim
_reflns.pdbx_Rpim_I_all
0.039
  Total number of observations -
Total number unique
_reflns.number_obs
69740
<I/σ(I)>
_reflns.pdbx_netI_over_sigmaI
9.70
Completeness [%]
_reflns.percent_possible_obs
100.0
Multiplicity
_reflns.pdbx_redundancy
13.5
CC(1/2)
_reflns.pdbx_CC_half
0.998

Refinement
PDB entry ID
_entry.id
8P0D
Deposition date
_pdbx_database_status.recvd_initial_deposition_date
2023-05-10
Resolution
_refine.ls_d_res_low _refine.ls_d_res_high
18.6 - 1.310 Å
Rwork/Rfree
_refine.ls_R_factor_R_work _refine.ls_R_factor_R_free
0.1775 / 0.2036
Structure solution method
_refine.pdbx_method_to_determine_struct
FOURIER SYNTHESIS