Data quality metrics extracted from 8oyk.cif.gz by aB_cif2table1 from BUSTER (Global Phasing Ltd.). See also the PDBx/mmCIF dictionary and a MXLIMS-compatible JSON representation.


Experimental information for 8OYK at RCSB, PDBe, PDBj

Experiment
Method
_exptl.method
X-RAY DIFFRACTION
Experimental protocol
_diffrn_radiation.pdbx_diffrn_protocol
SINGLE WAVELENGTH
Source type
_diffrn_source.source
SYNCHROTRON
Source details
_diffrn_source.type
DIAMOND BEAMLINE I24
Synchrotron site
_diffrn_source.pdbx_synchrotron_site
Diamond
Beamline
_diffrn_source.pdbx_synchrotron_beamline
I24
Temperature [K]
_diffrn.ambient_temp
100
Detector technology
_diffrn_detector.detector
PIXEL
Collection date
_diffrn_detector.pdbx_collection_date
2019-06-29
Detector
_diffrn_detector.type
DECTRIS PILATUS3 6M
Wavelength(s) [Å]
_diffrn_source.pdbx_wavelength_list
0.9700
Software
Data reduction
_software.classification
autoPROC (2.2.19)
Data scaling
_software.classification
Aimless (0.7.7)
Phasing
_software.classification
Arcimboldo (1.0.21)
Refinement
_software.classification
REFMAC (5.8.0411)
General information
Spacegroup name
_symmetry.space_group_name_H-M
P 1 21 1
Unit cell parameters
_cell.length_{a,b,c} _cell.angle_{alpha,beta,gamma}
43.539 31.269 64.473 90.00 98.08 90.00
Wavelength
_diffrn_radiation_wavelength.wavelength
0.97000 Å

Data quality metricsOverallOuterShell
Low resolution limit [Å]
_reflns.d_resolution_low _reflns_shell.d_res_low
63.830 1.940
High resolution limit [Å]
_reflns.d_resolution_high _reflns_shell.d_res_high
1.900 1.900
Rmerge
_reflns.pdbx_Rmerge_I_obs _reflns_shell.Rmerge_I_obs
0.038 0.119
Rmeas
_reflns.pdbx_Rrim_I_all _reflns_shell.pdbx_Rrim_I_all
0.054 0.168
Rpim
_reflns.pdbx_Rpim_I_all _reflns_shell.pdbx_Rpim_I_all
0.038 0.119
  Total number of observations - -
Total number unique
_reflns.number_obs _reflns_shell.number_unique_obs
13477 846
<I/σ(I)>
_reflns.pdbx_netI_over_sigmaI _reflns_shell.meanI_over_sigI_obs
15.40 6.00
Completeness [%]
_reflns.percent_possible_obs _reflns_shell.percent_possible_all
97.7 96.6
Multiplicity
_reflns.pdbx_redundancy _reflns_shell.pdbx_redundancy
1.9 1.9
CC(1/2)
_reflns_shell.pdbx_CC_half
- 0.957

Refinement
PDB entry ID
_entry.id
8OYK
Deposition date
_pdbx_database_status.recvd_initial_deposition_date
2023-05-05
Resolution
_refine.ls_d_res_low _refine.ls_d_res_high
63.8 - 1.900 Å
Rwork/Rfree
_refine.ls_R_factor_R_work _refine.ls_R_factor_R_free
0.1805 / 0.2249
Structure solution method
_refine.pdbx_method_to_determine_struct
AB INITIO PHASING