Data quality metrics extracted from 2oyo.cif.gz by aB_cif2table1 from BUSTER (Global Phasing Ltd.). See also the PDBx/mmCIF dictionary and a MXLIMS-compatible JSON representation.

Experimental information for 2OYO at RCSB, PDBe, PDBj

Experiment
Method
_exptl.method
X-RAY DIFFRACTION
Experimental protocol
_diffrn_radiation.pdbx_diffrn_protocol
MAD
Source type
_diffrn_source.source
SYNCHROTRON
Source details
_diffrn_source.type
SSRL BEAMLINE BL11-1
Synchrotron site
_diffrn_source.pdbx_synchrotron_site
SSRL
Beamline
_diffrn_source.pdbx_synchrotron_beamline
BL11-1
Temperature [K]
_diffrn.ambient_temp
100
Detector technology
_diffrn_detector.detector
CCD
Collection date
_diffrn_detector.pdbx_collection_date
2007-01-07
Detector
_diffrn_detector.type
MARMOSAIC 325 mm CCD
Wavelength(s) [Å]
_diffrn_source.pdbx_wavelength_list
0.91837, 0.97916, 0.97886
Software
Data collection
_software.classification
MAR345 (CCD)
Data reduction
_software.classification
XDS
Data scaling
_software.classification
XSCALE (Wolfgang Kabsch)
Phasing
_software.classification
autoSHARP
Model building
_software.classification
MolProbity (3beta29; D.C. & J.S. Richardson lab; molprobity@kinemage.biochem.duke.edu)
Refinement
_software.classification
REFMAC (5.2.0019; Murshudov, G.N.; ccp4@dl.ac.uk)
General information
Spacegroup name
_symmetry.space_group_name_H-M
H 3 2
Unit cell parameters
_cell.length_{a,b,c} _cell.angle_{alpha,beta,gamma}
135.649 135.649 118.084 90.0 90.0 120.0
Wavelength
_diffrn_radiation_wavelength.wavelength
0.918370.979160.97886 Å

Data quality metricsOverallInnerShellOuterShell
Low resolution limit [Å] 
_reflns.d_resolution_low _reflns_shell.d_res_low
 39.163 39.163 1.560
High resolution limit [Å] 
_reflns.d_resolution_high _reflns_shell.d_res_high
 1.510 2.580 1.510
Rmerge 
_reflns.pdbx_Rmerge_I_obs _reflns_shell.Rmerge_I_obs
 0.138 0.081 0.666
  Rmeas - - -
  Rpim - - -
Total number of observations 
_reflns_shell.number_measured_obs
 - 36724 17282
Total number unique 
_reflns.number_obs _reflns_shell.number_unique_all
 64521 6561 5063
<I/σ(I)> 
_reflns.pdbx_netI_over_sigmaI _reflns_shell.meanI_over_sigI_obs
 9.57 18.70 1.80
Completeness [%] 
_reflns.percent_possible_obs _reflns_shell.percent_possible_all
 96.5 99.7 84.3
  Multiplicity - - -
  CC(1/2) - - -

Refinement
PDB entry ID
_entry.id
2OYO
Deposition date
_pdbx_database_status.recvd_initial_deposition_date
2007-02-22
Resolution
_refine.ls_d_res_low _refine.ls_d_res_high
39.2 - 1.510 Å
Rwork/Rfree
_refine.ls_R_factor_R_work _refine.ls_R_factor_R_free
0.1820 / 0.2150
Structure solution method
_refine.pdbx_method_to_determine_struct
MAD