Data quality metrics extracted from 8otl.cif.gz by aB_cif2table1 from BUSTER (Global Phasing Ltd.). See also the PDBx/mmCIF dictionary and a MXLIMS-compatible JSON representation.


Experimental information for 8OTL at RCSB, PDBe, PDBj

Experiment
Method
_exptl.method
X-RAY DIFFRACTION
Experimental protocol
_diffrn_radiation.pdbx_diffrn_protocol
SINGLE WAVELENGTH
Source type
_diffrn_source.source
SYNCHROTRON
Source details
_diffrn_source.type
ESRF BEAMLINE ID30B
Synchrotron site
_diffrn_source.pdbx_synchrotron_site
ESRF
Beamline
_diffrn_source.pdbx_synchrotron_beamline
ID30B
Temperature [K]
_diffrn.ambient_temp
100
Detector technology
_diffrn_detector.detector
PIXEL
Collection date
_diffrn_detector.pdbx_collection_date
2022-05-05
Detector
_diffrn_detector.type
DECTRIS EIGER X 9M
Wavelength(s) [Å]
_diffrn_source.pdbx_wavelength_list
0.97625
Software
Data processing
_software.classification
autoPROC (1.0.5 20220608)
Data reduction
_software.classification
XDS (Jan 10, 2022)
Data scaling
_software.classification
Aimless (0.7.9)
Phasing
_software.classification
MOLREP (11.9.02)
Refinement
_software.classification
BUSTER (2.10.4 (8-JUN-2022))
General information
Spacegroup name
_symmetry.space_group_name_H-M
C 2 2 21
Unit cell parameters
_cell.length_{a,b,c} _cell.angle_{alpha,beta,gamma}
80.850 100.875 376.071 90.0 90.0 90.0
Wavelength
_diffrn_radiation_wavelength.wavelength
0.97625 Å

Data quality metricsOverallInnerShellOuterShell
Low resolution limit [Å]
_reflns.d_resolution_low _reflns_shell.d_res_low
62.218 62.218 2.144
High resolution limit [Å]
_reflns.d_resolution_high _reflns_shell.d_res_high
2.108 5.720 2.108
Rmerge
_reflns.pdbx_Rmerge_I_obs _reflns_shell.Rmerge_I_obs
0.165 0.063 0.876
Rmeas
_reflns.pdbx_Rrim_I_all _reflns_shell.pdbx_Rrim_I_all
0.175 0.067 0.933
Rpim
_reflns.pdbx_Rpim_I_all _reflns_shell.pdbx_Rpim_I_all
0.058 0.022 0.310
Total number of observations
_reflns.pdbx_number_measured_all _reflns_shell.number_measured_all
752360 38030 38601
Total number unique
_reflns.number_obs _reflns_shell.number_unique_all
84677 4652 4438
<I/σ(I)>
_reflns.pdbx_netI_over_sigmaI _reflns_shell.meanI_over_sigI_obs
9.73 22.11 2.43
Completeness [%]
_reflns.percent_possible_obs _reflns_shell.percent_possible_all
95.0 98.3 99.2
Multiplicity
_reflns.pdbx_redundancy _reflns_shell.pdbx_redundancy
8.9 8.2 8.7
CC(1/2)
_reflns.pdbx_CC_half _reflns_shell.pdbx_CC_half
0.996 0.998 0.673
Anomalous completeness
_reflns.pdbx_percent_possible_anomalous _reflns_shell.pdbx_percent_possible_anomalous
94.4 98.1 98.0
Anomalous multiplicity
_reflns.pdbx_redundancy_anomalous _reflns_shell.pdbx_redundancy_anomalous
4.7 4.6 4.5
CC(ano)
_reflns.pdbx_CC_half_anomalous _reflns_shell.pdbx_CC_half_anomalous
-0.078 -0.094 -0.040
|DANO|/σ(DANO)
_reflns.pdbx_absDiff_over_sigma_anomalous _reflns_shell.pdbx_absDiff_over_sigma_anomalous
0.767 0.708 0.742

Refinement
PDB entry ID
_entry.id
8OTL
Deposition date
_pdbx_database_status.recvd_initial_deposition_date
2023-04-21
Resolution
_refine.ls_d_res_low _refine.ls_d_res_high
30.6 - 2.108 Å
Rwork/Rfree
_refine.ls_R_factor_R_work _refine.ls_R_factor_R_free
0.1998 / 0.2373
Structure solution method
_refine.pdbx_method_to_determine_struct
MOLECULAR REPLACEMENT
Starting model (for MR)
_refine.pdbx_starting_model
WARNING: no starting model (for MR) given