Experiment | |
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Method _exptl.method | X-RAY DIFFRACTION The method used in the experiment. |
Experimental protocol _diffrn_radiation.pdbx_diffrn_protocol | MAD SINGLE WAVELENGTH, LAUE, or MAD. |
Source type _diffrn_source.source | SYNCHROTRON The general class of the radiation source. |
Source details _diffrn_source.type | SSRL BEAMLINE BL11-1 The make, model or name of the source of radiation. |
Synchrotron site _diffrn_source.pdbx_synchrotron_site | SSRL Synchrotron site. |
Beamline _diffrn_source.pdbx_synchrotron_beamline | BL11-1 Synchrotron beamline. |
Temperature [K] _diffrn.ambient_temp | 100 The mean temperature in kelvins at which the intensities were |
Detector technology _diffrn_detector.detector | CCD The general class of the radiation detector. |
Collection date _diffrn_detector.pdbx_collection_date | 2009-12-04 The date of data collection. |
Detector _diffrn_detector.type | MARMOSAIC 325 mm CCD The make, model or name of the detector device used. |
Wavelength(s) [Å] _diffrn_source.pdbx_wavelength_list | 0.91837,0.97937 Comma separated list of wavelengths or wavelength range. |
Software | |
Data reduction _software.classification | MOSFLM The classification of the program according to its |
Data scaling _software.classification | SCALA (3.3.15; 2009/03/31; Phil R. Evans; pre@mrc-lmb.cam.ac.uk) The classification of the program according to its |
Phasing #1 _software.classification | SHELX (George M. Sheldrick; gsheldr@shelx.uni-ac.gwdg.de) The classification of the program according to its |
Phasing #2 _software.classification | SHELXD The classification of the program according to its |
Phasing #3 _software.classification | autoSHARP The classification of the program according to its |
Model building _software.classification | MolProbity (3beta29; D.C. & J.S. Richardson lab; molprobity@kinemage.biochem.duke.edu) The classification of the program according to its |
Refinement #1 _software.classification | REFMAC (5.5.0110; Garib N. Murshudov; garib@ysbl.york.ac.uk) The classification of the program according to its |
Refinement #2 _software.classification | PHENIX (P.D. Adams; PDAdams@lbl.gov) The classification of the program according to its |
General information | |
Spacegroup name _symmetry.space_group_name_H-M | C 1 2 1 Hermann-Mauguin space-group symbol. Note that the |
Unit cell parameters _cell.length_{a,b,c} _cell.angle_{alpha,beta,gamma} | 129.093 Unit-cell length a corresponding to the structure reported in 87.958 Unit-cell length b corresponding to the structure reported in 107.041 Unit-cell length c corresponding to the structure reported in 90.00 Unit-cell angle alpha of the reported structure in degrees. 93.38 Unit-cell angle beta of the reported structure in degrees. 90.00 Unit-cell angle gamma of the reported structure in degrees. |
Wavelength _diffrn_radiation_wavelength.wavelength | 0.91837 The radiation wavelength in angstroms. 0.97937 ÅThe radiation wavelength in angstroms. |
Data quality metrics | Overall | InnerShell | OuterShell |
---|---|---|---|
Low resolution limit [Å] _reflns.d_resolution_low _reflns_shell.d_res_low | 29.587 The largest value in angstroms for the interplanar spacings | 29.587 The highest value in angstroms for the interplanar spacings | 1.950 The highest value in angstroms for the interplanar spacings |
High resolution limit [Å] _reflns.d_resolution_high _reflns_shell.d_res_high | 1.900 The smallest value in angstroms for the interplanar spacings | 8.500 The smallest value in angstroms for the interplanar spacings | 1.900 The smallest value in angstroms for the interplanar spacings |
Rmerge _reflns.pdbx_Rsym_value _reflns_shell.Rmerge_I_obs | 0.150 The R sym value as a decimal number. | 0.058 The value of Rmerge(I) for reflections classified as 'observed' | 0.661 The value of Rmerge(I) for reflections classified as 'observed' |
Rmeas _reflns.pdbx_Rrim_I_all _reflns_shell.pdbx_Rrim_I_all | 0.173 The redundancy-independent merging R factor value Rrim, | 0.068 The redundancy-independent merging R factor value Rrim, | 0.807 The redundancy-independent merging R factor value Rrim, |
Rpim _reflns.pdbx_Rpim_I_all _reflns_shell.pdbx_Rpim_I_all | 0.087 The precision-indicating merging R factor value Rpim, | 0.034 The precision-indicating merging R factor value Rpim, | 0.452 The precision-indicating merging R factor value Rpim, |
Total number of observations _reflns.pdbx_number_measured_all _reflns_shell.number_measured_all | 371314 Total number of measured reflections. | 4216 The total number of reflections measured for this | 20067 The total number of reflections measured for this |
Total number unique _reflns.number_obs _reflns_shell.number_unique_all | 93613 The number of reflections in the REFLN list (not the DIFFRN_REFLN | 1081 The total number of measured reflections which are symmetry- | 6523 The total number of measured reflections which are symmetry- |
<I/σ(I)> _reflns.pdbx_netI_over_sigmaI _reflns_shell.meanI_over_sigI_obs | 6.80 The mean of the ratio of the intensities to their | 9.70 The ratio of the mean of the intensities of the reflections | 1.10 The ratio of the mean of the intensities of the reflections |
Completeness [%] _reflns.percent_possible_obs _reflns_shell.percent_possible_all | 99.5 The percentage of geometrically possible reflections represented | 97.6 The percentage of geometrically possible reflections represented | 94.1 The percentage of geometrically possible reflections represented |
Multiplicity _reflns.pdbx_redundancy _reflns_shell.pdbx_redundancy | 4.0 Overall redundancy for this data set. | 3.9 Redundancy for the current shell. | 3.1 Redundancy for the current shell. |
CC(1/2) | - | - | - |
Refinement | |
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PDB entry ID _entry.id | 3NQP |
Deposition date _pdbx_database_status.recvd_initial_deposition_date | 2010-06-29 |
Resolution _refine.ls_d_res_low _refine.ls_d_res_high | 29.6 - 1.900 Å |
Rwork/Rfree _refine.ls_R_factor_R_work _refine.ls_R_factor_R_free | 0.1504 / 0.1938 |
Structure solution method _refine.pdbx_method_to_determine_struct | MAD |