Data quality metrics extracted from 3nqp.cif.gz by aB_cif2table1 from BUSTER (Global Phasing Ltd.). See also the PDBx/mmCIF dictionary and a MXLIMS-compatible JSON representation.


Experimental information for 3NQP at RCSB, PDBe, PDBj

Experiment
Method
_exptl.method
X-RAY DIFFRACTION
Experimental protocol
_diffrn_radiation.pdbx_diffrn_protocol
MAD
Source type
_diffrn_source.source
SYNCHROTRON
Source details
_diffrn_source.type
SSRL BEAMLINE BL11-1
Synchrotron site
_diffrn_source.pdbx_synchrotron_site
SSRL
Beamline
_diffrn_source.pdbx_synchrotron_beamline
BL11-1
Temperature [K]
_diffrn.ambient_temp
100
Detector technology
_diffrn_detector.detector
CCD
Collection date
_diffrn_detector.pdbx_collection_date
2009-12-04
Detector
_diffrn_detector.type
MARMOSAIC 325 mm CCD
Wavelength(s) [Å]
_diffrn_source.pdbx_wavelength_list
0.91837,0.97937
Software
Data reduction
_software.classification
MOSFLM
Data scaling
_software.classification
SCALA (3.3.15; 2009/03/31; Phil R. Evans; pre@mrc-lmb.cam.ac.uk)
Phasing #1
_software.classification
SHELX (George M. Sheldrick; gsheldr@shelx.uni-ac.gwdg.de)
Phasing #2
_software.classification
SHELXD
Phasing #3
_software.classification
autoSHARP
Model building
_software.classification
MolProbity (3beta29; D.C. & J.S. Richardson lab; molprobity@kinemage.biochem.duke.edu)
Refinement #1
_software.classification
REFMAC (5.5.0110; Garib N. Murshudov; garib@ysbl.york.ac.uk)
Refinement #2
_software.classification
PHENIX (P.D. Adams; PDAdams@lbl.gov)
General information
Spacegroup name
_symmetry.space_group_name_H-M
C 1 2 1
Unit cell parameters
_cell.length_{a,b,c} _cell.angle_{alpha,beta,gamma}
129.093 87.958 107.041 90.00 93.38 90.00
Wavelength
_diffrn_radiation_wavelength.wavelength
0.918370.97937 Å

Data quality metricsOverallInnerShellOuterShell
Low resolution limit [Å]
_reflns.d_resolution_low _reflns_shell.d_res_low
29.587 29.587 1.950
High resolution limit [Å]
_reflns.d_resolution_high _reflns_shell.d_res_high
1.900 8.500 1.900
Rmerge
_reflns.pdbx_Rsym_value _reflns_shell.Rmerge_I_obs
0.150 0.058 0.661
Rmeas
_reflns.pdbx_Rrim_I_all _reflns_shell.pdbx_Rrim_I_all
0.173 0.068 0.807
Rpim
_reflns.pdbx_Rpim_I_all _reflns_shell.pdbx_Rpim_I_all
0.087 0.034 0.452
Total number of observations
_reflns.pdbx_number_measured_all _reflns_shell.number_measured_all
371314 4216 20067
Total number unique
_reflns.number_obs _reflns_shell.number_unique_all
93613 1081 6523
<I/σ(I)>
_reflns.pdbx_netI_over_sigmaI _reflns_shell.meanI_over_sigI_obs
6.80 9.70 1.10
Completeness [%]
_reflns.percent_possible_obs _reflns_shell.percent_possible_all
99.5 97.6 94.1
Multiplicity
_reflns.pdbx_redundancy _reflns_shell.pdbx_redundancy
4.0 3.9 3.1
  CC(1/2) - - -

Refinement
PDB entry ID
_entry.id
3NQP
Deposition date
_pdbx_database_status.recvd_initial_deposition_date
2010-06-29
Resolution
_refine.ls_d_res_low _refine.ls_d_res_high
29.6 - 1.900 Å
Rwork/Rfree
_refine.ls_R_factor_R_work _refine.ls_R_factor_R_free
0.1504 / 0.1938
Structure solution method
_refine.pdbx_method_to_determine_struct
MAD