Data quality metrics extracted from 4npf.cif.gz by aB_cif2table1 from BUSTER (Global Phasing Ltd.). See also the PDBx/mmCIF dictionary and a MXLIMS-compatible JSON representation.


Experimental information for 4NPF at RCSB, PDBe, PDBj

Experiment
Method
_exptl.method
X-RAY DIFFRACTION
Experimental protocol
_diffrn_radiation.pdbx_diffrn_protocol
SINGLE WAVELENGTH
Source type
_diffrn_source.source
SYNCHROTRON
Source details
_diffrn_source.type
APS BEAMLINE 22-ID
Synchrotron site
_diffrn_source.pdbx_synchrotron_site
APS
Beamline
_diffrn_source.pdbx_synchrotron_beamline
22-ID
Temperature [K]
_diffrn.ambient_temp
100
Detector technology
_diffrn_detector.detector
CCD
Collection date
_diffrn_detector.pdbx_collection_date
2013-07-29
Detector
_diffrn_detector.type
MARMOSAIC 300 mm CCD
Wavelength(s) [Å]
_diffrn_source.pdbx_wavelength_list
1.0
Software
Data collection
_software.classification
HKL-2000
Data reduction
_software.classification
DENZO (Zbyszek Otwinowski; hkl@hkl-xray.com)
Data scaling
_software.classification
SCALEPACK (Zbyszek Otwinowski; hkl@hkl-xray.com)
Phasing
_software.classification
PHENIX (1.8.3_1479)
Refinement
_software.classification
PHENIX (1.8.3_1479; Paul D. Adams; PDAdams@lbl.gov)
General information
Spacegroup name
_symmetry.space_group_name_H-M
P 65
Unit cell parameters
_cell.length_{a,b,c} _cell.angle_{alpha,beta,gamma}
44.412 44.412 214.790 90.0 90.0 120.0
Wavelength
_diffrn_radiation_wavelength.wavelength
1.00000 Å

Data quality metricsOverallInnerShellOuterShell
Low resolution limit [Å]
_reflns.d_resolution_low _reflns_shell.d_res_low
50.000 50.000 1.520
High resolution limit [Å]
_reflns.d_resolution_high _reflns_shell.d_res_high
1.490 4.040 1.490
Rmerge
_reflns.pdbx_Rmerge_I_obs _reflns_shell.Rmerge_I_obs
0.101 0.059 0.616
  Rmeas - - -
  Rpim - - -
  Total number of observations - - -
Total number unique
_reflns.number_obs _reflns_shell.number_unique_all
39130 1985 1909
<I/σ(I)>
_reflns.pdbx_netI_over_sigmaI
7.50 - -
Completeness [%]
_reflns.percent_possible_obs _reflns_shell.percent_possible_all
99.9 99.3 99.6
Multiplicity
_reflns.pdbx_redundancy _reflns_shell.pdbx_redundancy
6.8 5.3 4.4
  CC(1/2) - - -

Refinement
PDB entry ID
_entry.id
4NPF
Deposition date
_pdbx_database_status.recvd_initial_deposition_date
2013-11-21
Resolution
_refine.ls_d_res_low _refine.ls_d_res_high
37.9 - 1.490 Å
Rwork/Rfree
_refine.ls_R_factor_R_work _refine.ls_R_factor_R_free
0.1424 / 0.1847
Structure solution method
_refine.pdbx_method_to_determine_struct
MOLECULAR REPLACEMENT
Starting model (for MR)
_refine.pdbx_starting_model
WARNING: no starting model (for MR) given