Data quality metrics extracted from 4npd.cif.gz by aB_cif2table1 from BUSTER (Global Phasing Ltd.). See also the PDBx/mmCIF dictionary and a MXLIMS-compatible JSON representation.


Experimental information for 4NPD at RCSB, PDBe, PDBj

Experiment
Method
_exptl.method
X-RAY DIFFRACTION
Experimental protocol
_diffrn_radiation.pdbx_diffrn_protocol
SINGLE WAVELENGTH
Source type
_diffrn_source.source
SYNCHROTRON
Source details
_diffrn_source.type
APS BEAMLINE 22-ID
Synchrotron site
_diffrn_source.pdbx_synchrotron_site
APS
Beamline
_diffrn_source.pdbx_synchrotron_beamline
22-ID
Temperature [K]
_diffrn.ambient_temp
100
Detector technology
_diffrn_detector.detector
CCD
Collection date
_diffrn_detector.pdbx_collection_date
2013-04-04
Detector
_diffrn_detector.type
MARMOSAIC 300 mm CCD
Wavelength(s) [Å]
_diffrn_source.pdbx_wavelength_list
0.8
Software
Data collection
_software.classification
HKL-2000
Data reduction #1
_software.classification
DENZO (Zbyszek Otwinowski; hkl@hkl-xray.com)
Data reduction #2
_software.classification
HKL-2000
Data scaling #1
_software.classification
SCALEPACK (Zbyszek Otwinowski; hkl@hkl-xray.com)
Data scaling #2
_software.classification
HKL-2000
Phasing #1
_software.classification
SHELX (George M. Sheldrick; gsheldr@shelx.uni-ac.gwdg.de)
Phasing #2
_software.classification
SHELXD
Refinement
_software.classification
PHENIX (dev_1664; Paul D. Adams; PDAdams@lbl.gov)
General information
Spacegroup name
_symmetry.space_group_name_H-M
P 1 21 1
Unit cell parameters
_cell.length_{a,b,c} _cell.angle_{alpha,beta,gamma}
27.25 38.41 28.61 90.00 117.44 90.00
Wavelength
_diffrn_radiation_wavelength.wavelength
0.80000 Å

Data quality metricsOverallInnerShellOuterShell
Low resolution limit [Å]
_reflns.d_resolution_low _reflns_shell.d_res_low
50.000 50.000 0.920
High resolution limit [Å]
_reflns.d_resolution_high _reflns_shell.d_res_high
0.900 2.440 0.900
Rmerge
_reflns.pdbx_Rmerge_I_obs _reflns_shell.Rmerge_I_obs
0.066 0.045 0.197
  Rmeas - - -
  Rpim - - -
  Total number of observations - - -
Total number unique
_reflns.number_obs
37877 - -
<I/σ(I)>
_reflns.pdbx_netI_over_sigmaI
11.50 - -
Completeness [%]
_reflns.percent_possible_obs _reflns_shell.percent_possible_all
97.5 96.0 77.7
Multiplicity
_reflns.pdbx_redundancy _reflns_shell.pdbx_redundancy
6.1 3.3 2.7
  CC(1/2) - - -

Refinement
PDB entry ID
_entry.id
4NPD
Deposition date
_pdbx_database_status.recvd_initial_deposition_date
2013-11-21
Resolution
_refine.ls_d_res_low _refine.ls_d_res_high
25.4 - 0.900 Å
Rwork/Rfree
_refine.ls_R_factor_R_work _refine.ls_R_factor_R_free
0.1120 / 0.1300
Structure solution method
_refine.pdbx_method_to_determine_struct
SAD