Data quality metrics extracted from 3npn.cif.gz by aB_cif2table1 from BUSTER (Global Phasing Ltd.). See also the PDBx/mmCIF dictionary and a MXLIMS-compatible JSON representation.


Experimental information for 3NPN at RCSB, PDBe, PDBj

Experiment
Method
_exptl.method
X-RAY DIFFRACTION
Experimental protocol
_diffrn_radiation.pdbx_diffrn_protocol
SINGLE WAVELENGTH
Source type
_diffrn_source.source
SYNCHROTRON
Source details
_diffrn_source.type
NSLS BEAMLINE X25
Synchrotron site
_diffrn_source.pdbx_synchrotron_site
NSLS
Beamline
_diffrn_source.pdbx_synchrotron_beamline
X25
Temperature [K]
_diffrn.ambient_temp
100
Detector technology
_diffrn_detector.detector
CCD
Collection date
_diffrn_detector.pdbx_collection_date
2009-06-03
Detector
_diffrn_detector.type
ADSC QUANTUM 315
Wavelength(s) [Å]
_diffrn_source.pdbx_wavelength_list
1.1051
Software
Data reduction
_software.classification
DENZO
Data scaling #1
_software.classification
SCALA (3.3.12; 2009/01/20; Phil R. Evans; pre@mrc-lmb.cam.ac.uk)
Data scaling #2
_software.classification
SCALEPACK
Phasing #1
_software.classification
PHASER (Randy J. Read; cimr-phaser@lists.cam.ac.uk)
Phasing #2
_software.classification
RESOLVE (2.14; 14-Jan-2009; Thomas C. Terwilliger; terwilliger@lanl.gov)
Refinement
_software.classification
REFMAC (refmac_5.5.0102; 24/04/2001; Garib N. Murshudov; garib@ysbl.york.ac.uk)
General information
Spacegroup name
_symmetry.space_group_name_H-M
H 3 2
Unit cell parameters
_cell.length_{a,b,c} _cell.angle_{alpha,beta,gamma}
105.36 105.36 107.78 90.0 90.0 120.0
Wavelength
_diffrn_radiation_wavelength.wavelength
1.10510 Å

Data quality metricsOverallInnerShellOuterShell
Low resolution limit [Å]
_reflns.d_resolution_low _reflns_shell.d_res_low
29.059 29.680 2.940
High resolution limit [Å]
_reflns.d_resolution_high _reflns_shell.d_res_high
2.775 8.830 2.775
Rmerge
_reflns.pdbx_Rsym_value _reflns_shell.Rmerge_I_obs
0.123 0.010 0.010
  Rmeas - - -
  Rpim - - -
Total number of observations
_reflns_shell.number_measured_all
- 1048 4868
Total number unique
_reflns.number_obs _reflns_shell.number_unique_all
5854 195 852
<I/σ(I)>
_reflns.pdbx_netI_over_sigmaI _reflns_shell.meanI_over_sigI_obs
4.06 11.00 0.70
Completeness [%]
_reflns.percent_possible_obs _reflns_shell.percent_possible_all
99.8 94.9 99.9
Multiplicity
_reflns.pdbx_redundancy _reflns_shell.pdbx_redundancy
5.6 5.4 5.7
  CC(1/2) - - -

Refinement
PDB entry ID
_entry.id
3NPN
Deposition date
_pdbx_database_status.recvd_initial_deposition_date
2010-06-28
Resolution
_refine.ls_d_res_low _refine.ls_d_res_high
29.1 - 2.792 Å
Rwork/Rfree
_refine.ls_R_factor_R_work _refine.ls_R_factor_R_free
0.2520 / 0.2920
Structure solution method
_refine.pdbx_method_to_determine_struct
SAD