Data quality metrics extracted from mmCIF - (by aB_cif2table1 from BUSTER, Global Phasing Ltd.)

Data quality metrics extracted from 3npd.cif.gz by aB_cif2table1 from BUSTER (Global Phasing Ltd.). See also the PDBx/mmCIF dictionary and a MXLIMS-compatible JSON representation.

Experimental information for 3NPD at RCSB, PDBe, PDBj

Experiment
Method _exptl.method	X-RAY DIFFRACTION
Experimental protocol _diffrn_radiation.pdbx_diffrn_protocol	MAD
Source type _diffrn_source.source	SYNCHROTRON
Source details _diffrn_source.type	SSRL BEAMLINE BL9-2
Synchrotron site _diffrn_source.pdbx_synchrotron_site	SSRL
Beamline _diffrn_source.pdbx_synchrotron_beamline	BL9-2
Temperature [K] _diffrn.ambient_temp	100
Detector technology _diffrn_detector.detector	CCD
Collection date _diffrn_detector.pdbx_collection_date	2010-05-12
Detector _diffrn_detector.type	MARMOSAIC 325 mm CCD
Wavelength(s) [Å] _diffrn_source.pdbx_wavelength_list	0.91837,0.97941,0.97925
Software
Data reduction _software.classification	XDS
Data scaling _software.classification	XSCALE (Wolfgang Kabsch)
Phasing _software.classification	SOLVE (Tom Terwilliger; terwilliger@LANL.gov)
Refinement _software.classification	REFMAC (5.5.0110; Garib N. Murshudov; garib@ysbl.york.ac.uk)
General information
Spacegroup name _symmetry.space_group_name_H-M	P 21 21 21
Unit cell parameters _cell.length_{a,b,c} _cell.angle_{alpha,beta,gamma}	34.989 51.317 56.898 90.0 90.0 90.0
Wavelength _diffrn_radiation_wavelength.wavelength	0.91837 0.97941 0.97925 Å

Data quality metrics	Overall	InnerShell	OuterShell
Low resolution limit [Å] _reflns.d_resolution_low _reflns_shell.d_res_low	28.909	28.909	1.660
High resolution limit [Å] _reflns.d_resolution_high _reflns_shell.d_res_high	1.600	3.440	1.600
Rmerge _reflns.pdbx_Rmerge_I_obs _reflns_shell.Rmerge_I_obs	0.060	0.033	0.473
Rmeas	-	-	-
Rpim	-	-	-
Total number of observations _reflns_shell.number_measured_obs	-	4949	4974
Total number unique _reflns.number_obs _reflns_shell.number_unique_obs	14032	2551	2635
<I/σ(I)> _reflns.pdbx_netI_over_sigmaI _reflns_shell.meanI_over_sigI_obs	7.97	20.40	1.50
Completeness [%] _reflns.percent_possible_obs _reflns_shell.percent_possible_all	98.5	96.0	96.1
Multiplicity	-	-	-
CC(1/2)	-	-	-

Refinement
PDB entry ID _entry.id	3NPD
Deposition date _pdbx_database_status.recvd_initial_deposition_date	2010-06-28
Resolution _refine.ls_d_res_low _refine.ls_d_res_high	28.9 - 1.600 Å
Rwork/Rfree _refine.ls_R_factor_R_work _refine.ls_R_factor_R_free	0.1602 / 0.2046
Structure solution method _refine.pdbx_method_to_determine_struct	MAD