Data quality metrics extracted from 1npm.cif.gz by aB_cif2table1 from BUSTER (Global Phasing Ltd.). See also the PDBx/mmCIF dictionary and a MXLIMS-compatible JSON representation.


Experimental information for 1NPM at RCSB, PDBe, PDBj

Experiment
Method
_exptl.method
X-RAY DIFFRACTION
Source type
_diffrn_source.source
SYNCHROTRON
Source details
_diffrn_source.type
PHOTON FACTORY BEAMLINE BL-18B
Synchrotron site
_diffrn_source.pdbx_synchrotron_site
Photon Factory
Beamline
_diffrn_source.pdbx_synchrotron_beamline
BL-18B
Temperature [K]
_diffrn.ambient_temp
277
Detector technology
_diffrn_detector.detector
IMAGE PLATE
Collection date
_diffrn_detector.pdbx_collection_date
1996-11
Software
Data reduction #1
_software.classification
DENZO
Data reduction #2
_software.classification
SCALA(CCP4)
Data scaling
_software.classification
CCP4 (SCALA)
Phasing
_software.classification
X-PLOR (3.851)
Model building
_software.classification
X-PLOR (3.851)
Refinement
_software.classification
X-PLOR (3.851)
General information
Spacegroup name
_symmetry.space_group_name_H-M
P 1
Unit cell parameters
_cell.length_{a,b,c} _cell.angle_{alpha,beta,gamma}
38.40 55.16 65.37 95.38 89.98 110.46
Wavelength
_diffrn_radiation_wavelength.wavelength
1.00000 Å

Data quality metricsOverall
Low resolution limit [Å]
_reflns.d_resolution_low
100.000
High resolution limit [Å]
_reflns.d_resolution_high
2.100
Rmerge
_reflns.pdbx_Rmerge_I_obs
0.060
  Rmeas -
  Rpim -
  Total number of observations -
Total number unique
_reflns.number_obs
24944
<I/σ(I)>
_reflns.pdbx_netI_over_sigmaI
8.50
Completeness [%]
_reflns.percent_possible_obs
90.0
Multiplicity
_reflns.pdbx_redundancy
2.5
  CC(1/2) -

Refinement
PDB entry ID
_entry.id
1NPM
Deposition date
_pdbx_database_status.recvd_initial_deposition_date
1998-01-07
Resolution
_refine.ls_d_res_low _refine.ls_d_res_high
100.0 - 2.100 Å
Rwork/Rfree
_refine.ls_R_factor_R_work _refine.ls_R_factor_R_free
0.1860 / 0.2270
Structure solution method
_refine.pdbx_method_to_determine_struct
MOLECULAR REPLACEMENT
Starting model (for MR)
_refine.pdbx_starting_model
PDB ENTRY 4PTP