Data quality metrics extracted from 1npd.cif.gz by aB_cif2table1 from BUSTER (Global Phasing Ltd.). See also the PDBx/mmCIF dictionary and a MXLIMS-compatible JSON representation.


Experimental information for 1NPD at RCSB, PDBe, PDBj

Experiment
Method
_exptl.method
X-RAY DIFFRACTION
Experimental protocol
_diffrn_radiation.pdbx_diffrn_protocol
MULTIPLE WAVELENGTH
Source type
_diffrn_source.source
SYNCHROTRON
Source details
_diffrn_source.type
NSLS BEAMLINE X12C
Synchrotron site
_diffrn_source.pdbx_synchrotron_site
NSLS
Beamline
_diffrn_source.pdbx_synchrotron_beamline
X12C
Temperature [K]
_diffrn.ambient_temp
90
Detector technology
_diffrn_detector.detector
CCD
Collection date
_diffrn_detector.pdbx_collection_date
2002-11-22
Detector
_diffrn_detector.type
BRANDEIS - B4
Wavelength(s) [Å]
_diffrn_source.pdbx_wavelength_list
0.979, 0.9787, 0.92
Software
Data reduction
_software.classification
DENZO
Data scaling
_software.classification
SCALEPACK
Phasing #1
_software.classification
SOLVE
Phasing #2
_software.classification
RESOLVE
Refinement
_software.classification
CNS (1.1)
General information
Spacegroup name
_symmetry.space_group_name_H-M
P 64
Unit cell parameters
_cell.length_{a,b,c} _cell.angle_{alpha,beta,gamma}
157.185 157.185 39.782 90.0 90.0 120.0
Wavelength
_diffrn_radiation_wavelength.wavelength
0.979000.978700.92000 Å

Data quality metricsOverall
Low resolution limit [Å]
_reflns.d_resolution_low
100.000
High resolution limit [Å]
_reflns.d_resolution_high
2.300
Rmerge
_reflns.pdbx_Rmerge_I_obs
0.092
  Rmeas -
  Rpim -
  Total number of observations -
Total number unique
_reflns.number_obs
48734
<I/σ(I)>
_reflns.pdbx_netI_over_sigmaI
31.20
Completeness [%]
_reflns.percent_possible_obs
99.8
Multiplicity
_reflns.pdbx_redundancy
10.9
  CC(1/2) -

Refinement
PDB entry ID
_entry.id
1NPD
Deposition date
_pdbx_database_status.recvd_initial_deposition_date
2003-01-17
Resolution
_refine.ls_d_res_low _refine.ls_d_res_high
19.7 - 2.300 Å
Rwork/Rfree
_refine.ls_R_factor_R_work _refine.ls_R_factor_R_free
0.2170 / 0.2740
Structure solution method
_refine.pdbx_method_to_determine_struct
MAD