Data quality metrics extracted from 5nmm.cif.gz by aB_cif2table1 from BUSTER (Global Phasing Ltd.). See also the PDBx/mmCIF dictionary and a MXLIMS-compatible JSON representation.


Experimental information for 5NMM at RCSB, PDBe, PDBj

Experiment
Method
_exptl.method
X-RAY DIFFRACTION
Experimental protocol
_diffrn_radiation.pdbx_diffrn_protocol
SINGLE WAVELENGTH
Source type
_diffrn_source.source
SYNCHROTRON
Source details
_diffrn_source.type
DIAMOND BEAMLINE I03
Synchrotron site
_diffrn_source.pdbx_synchrotron_site
Diamond
Beamline
_diffrn_source.pdbx_synchrotron_beamline
I03
Temperature [K]
_diffrn.ambient_temp
100
Detector technology
_diffrn_detector.detector
PIXEL
Collection date
_diffrn_detector.pdbx_collection_date
2015-08-06
Detector
_diffrn_detector.type
DECTRIS PILATUS3 6M
Wavelength(s) [Å]
_diffrn_source.pdbx_wavelength_list
0.92
Software
Data reduction
_software.classification
xia2
Data scaling
_software.classification
xia2
Phasing
_software.classification
PHASER
Refinement
_software.classification
PHENIX (1.8.1_1168)
General information
Spacegroup name
_symmetry.space_group_name_H-M
P 1 21 1
Unit cell parameters
_cell.length_{a,b,c} _cell.angle_{alpha,beta,gamma}
33.36 93.04 35.91 90.00 100.22 90.00
Wavelength
_diffrn_radiation_wavelength.wavelength
0.92000 Å

Data quality metricsOverallOuterShell
Low resolution limit [Å]
_reflns.d_resolution_low _reflns_shell.d_res_low
46.520 2.070
High resolution limit [Å]
_reflns.d_resolution_high _reflns_shell.d_res_high
2.020 2.020
Rmerge
_reflns.pdbx_Rmerge_I_obs _reflns_shell.Rmerge_I_obs
0.058 0.701
  Rmeas - -
Rpim
_reflns.pdbx_Rpim_I_all _reflns_shell.pdbx_Rpim_I_all
0.044 0.618
  Total number of observations - -
Total number unique
_reflns.number_obs _reflns_shell.number_unique_obs
13900 1009
<I/σ(I)>
_reflns.pdbx_netI_over_sigmaI _reflns_shell.meanI_over_sigI_obs
11.40 2.40
Completeness [%]
_reflns.percent_possible_obs _reflns_shell.percent_possible_all
98.1 97.3
Multiplicity
_reflns.pdbx_redundancy _reflns_shell.pdbx_redundancy
3.8 3.9
  CC(1/2) - -

Refinement
PDB entry ID
_entry.id
5NMM
Deposition date
_pdbx_database_status.recvd_initial_deposition_date
2017-04-06
Resolution
_refine.ls_d_res_low _refine.ls_d_res_high
46.5 - 2.020 Å
Rwork/Rfree
_refine.ls_R_factor_R_work _refine.ls_R_factor_R_free
0.1924 / 0.2370