Data quality metrics extracted from 4nex.cif.gz by aB_cif2table1 from BUSTER (Global Phasing Ltd.). See also the PDBx/mmCIF dictionary and a MXLIMS-compatible JSON representation.


Experimental information for 4NEX at RCSB, PDBe, PDBj

Experiment
Method
_exptl.method
X-RAY DIFFRACTION
Experimental protocol
_diffrn_radiation.pdbx_diffrn_protocol
SINGLE WAVELENGTH
Source type
_diffrn_source.source
SYNCHROTRON
Source details
_diffrn_source.type
APS BEAMLINE 22-ID
Synchrotron site
_diffrn_source.pdbx_synchrotron_site
APS
Beamline
_diffrn_source.pdbx_synchrotron_beamline
22-ID
Temperature [K]
_diffrn.ambient_temp
298
Detector technology
_diffrn_detector.detector
CCD
Collection date
_diffrn_detector.pdbx_collection_date
2013-06-16
Detector
_diffrn_detector.type
MARMOSAIC 300 mm CCD
Software
Data collection
_software.classification
CBASS
Data reduction #1
_software.classification
DENZO (Zbyszek Otwinowski; hkl@hkl-xray.com)
Data reduction #2
_software.classification
HKL-2000
Data scaling
_software.classification
SCALEPACK (Zbyszek Otwinowski; hkl@hkl-xray.com)
Phasing
_software.classification
PHASER (2.5.3; Wed Feb 27 05:44:50 2013 (svn ); Randy J. Read; cimr-phaser@lists.cam.ac.uk)
Refinement
_software.classification
PHENIX (1.8.2_1309; Paul D. Adams; PDAdams@lbl.gov)
General information
Spacegroup name
_symmetry.space_group_name_H-M
P 41 21 2
Unit cell parameters
_cell.length_{a,b,c} _cell.angle_{alpha,beta,gamma}
51.718 51.718 242.309 90.0 90.0 90.0
Wavelength
_diffrn_radiation_wavelength.wavelength
1.00000 Å

Data quality metricsOverallOuterShell
Low resolution limit [Å]
_reflns.d_resolution_low _reflns_shell.d_res_low
40.000 1.730
High resolution limit [Å]
_reflns.d_resolution_high _reflns_shell.d_res_high
1.696 1.696
Rmerge
_reflns.pdbx_Rmerge_I_obs _reflns_shell.Rmerge_I_obs
0.079 0.690
  Rmeas - -
  Rpim - -
  Total number of observations - -
Total number unique
_reflns.number_obs
37347 -
<I/σ(I)>
_reflns.pdbx_netI_over_sigmaI _reflns_shell.meanI_over_sigI_obs
55.80 3.40
Completeness [%]
_reflns.percent_possible_obs _reflns_shell.percent_possible_all
98.4 97.2
Multiplicity
_reflns.pdbx_redundancy _reflns_shell.pdbx_redundancy
13.0 10.9
  CC(1/2) - -

Refinement
PDB entry ID
_entry.id
4NEX
Deposition date
_pdbx_database_status.recvd_initial_deposition_date
2013-10-30
Resolution
_refine.ls_d_res_low _refine.ls_d_res_high
39.3 - 1.696 Å
Rwork/Rfree
_refine.ls_R_factor_R_work _refine.ls_R_factor_R_free
0.1890 / 0.2190
Structure solution method
_refine.pdbx_method_to_determine_struct
MOLECULAR REPLACEMENT
Starting model (for MR)
_refine.pdbx_starting_model
PDB ENTRY 3S6H