Data quality metrics extracted from 3ned.cif.gz by aB_cif2table1 from BUSTER (Global Phasing Ltd.). See also the PDBx/mmCIF dictionary and a MXLIMS-compatible JSON representation.


Experimental information for 3NED at RCSB, PDBe, PDBj

Experiment
Method
_exptl.method
X-RAY DIFFRACTION
Experimental protocol
_diffrn_radiation.pdbx_diffrn_protocol
SINGLE WAVELENGTH
Source type
_diffrn_source.source
SYNCHROTRON
Source details
_diffrn_source.type
SSRL BEAMLINE BL12-2
Synchrotron site
_diffrn_source.pdbx_synchrotron_site
SSRL
Beamline
_diffrn_source.pdbx_synchrotron_beamline
BL12-2
Temperature [K]
_diffrn.ambient_temp
100
Detector technology
_diffrn_detector.detector
CCD
Collection date
_diffrn_detector.pdbx_collection_date
2008-11-28
Detector
_diffrn_detector.type
MAR CCD 165 mm
Wavelength(s) [Å]
_diffrn_source.pdbx_wavelength_list
1.0
Software
Data reduction
_software.classification
iMOSFLM
Phasing
_software.classification
ACORN
Refinement
_software.classification
REFMAC (5.5.0088)
General information
Spacegroup name
_symmetry.space_group_name_H-M
P 1 21 1
Unit cell parameters
_cell.length_{a,b,c} _cell.angle_{alpha,beta,gamma}
48.807 42.760 61.203 90.00 112.35 90.00
Wavelength
_diffrn_radiation_wavelength.wavelength
1.00000 Å

Data quality metricsOverall
Low resolution limit [Å]
_reflns.d_resolution_low
56.700
High resolution limit [Å]
_reflns.d_resolution_high
0.950
Rmerge
_reflns.pdbx_Rmerge_I_obs
0.121
  Rmeas -
  Rpim -
  Total number of observations -
Total number unique
_reflns.number_obs
135356
<I/σ(I)>
_reflns.pdbx_netI_over_sigmaI
9.70
Completeness [%]
_reflns.percent_possible_obs
91.9
  Multiplicity -
  CC(1/2) -

Refinement
PDB entry ID
_entry.id
3NED
Deposition date
_pdbx_database_status.recvd_initial_deposition_date
2010-06-08
Resolution
_refine.ls_d_res_low _refine.ls_d_res_high
56.6 - 0.950 Å
Rwork/Rfree
_refine.ls_R_factor_R_work _refine.ls_R_factor_R_free
0.1334 / 0.1569
Structure solution method
_refine.pdbx_method_to_determine_struct
AB INITIO PHASING