Data quality metrics extracted from 1ned.cif.gz by aB_cif2table1 from BUSTER (Global Phasing Ltd.). See also the PDBx/mmCIF dictionary and a MXLIMS-compatible JSON representation.


Experimental information for 1NED at RCSB, PDBe, PDBj

Experiment
Method
_exptl.method
X-RAY DIFFRACTION
Source type
_diffrn_source.source
ROTATING ANODE
Source details
_diffrn_source.type
RIGAKU RUH2R
Temperature [K]
_diffrn.ambient_temp
293
Detector technology
_diffrn_detector.detector
IMAGE PLATE
Collection date
_diffrn_detector.pdbx_collection_date
1996-12
Detector
_diffrn_detector.type
MARRESEARCH
Software
Data reduction
_software.classification
MOSFLM (V. 5.3)
Data scaling #1
_software.classification
CCP4 (AGROVATA
Data scaling #2
_software.classification
ROTAVATA
Phasing
_software.classification
CCP4
Model building #1
_software.classification
CCP4
Model building #2
_software.classification
FRODO
Refinement
_software.classification
X-PLOR (3.842)
General information
Spacegroup name
_symmetry.space_group_name_H-M
P 42 21 2
Unit cell parameters
_cell.length_{a,b,c} _cell.angle_{alpha,beta,gamma}
108.4 108.4 103.2 90.0 90.0 90.0
Wavelength
_diffrn_radiation_wavelength.wavelength
1.54180 Å

Data quality metricsOverall
Low resolution limit [Å]
_reflns.d_resolution_low
15.000
High resolution limit [Å]
_reflns.d_resolution_high
3.800
Rmerge
_reflns.pdbx_Rsym_value
0.073
  Rmeas -
  Rpim -
  Total number of observations -
Total number unique
_reflns.number_obs
6404
  <I/σ(I)> -
Completeness [%]
_reflns.percent_possible_obs
99.8
Multiplicity
_reflns.pdbx_redundancy
5.7
  CC(1/2) -

Refinement
PDB entry ID
_entry.id
1NED
Deposition date
_pdbx_database_status.recvd_initial_deposition_date
1997-04-04
Resolution
_refine.ls_d_res_low _refine.ls_d_res_high
15.0 - 3.800 Å
Rwork/Rfree
_refine.ls_R_factor_R_work _refine.ls_R_factor_R_free
0.2560 / 0.3150
Structure solution method
_refine.pdbx_method_to_determine_struct
MIR