Data quality metrics extracted from 6ndj.cif.gz by aB_cif2table1 from BUSTER (Global Phasing Ltd.). See also the PDBx/mmCIF dictionary and a MXLIMS-compatible JSON representation.


Experimental information for 6NDJ at RCSB, PDBe, PDBj

Experiment
Method
_exptl.method
X-RAY DIFFRACTION
Experimental protocol
_diffrn_radiation.pdbx_diffrn_protocol
SINGLE WAVELENGTH
Source type
_diffrn_source.source
SYNCHROTRON
Source details
_diffrn_source.type
APS BEAMLINE 24-ID-C
Synchrotron site
_diffrn_source.pdbx_synchrotron_site
APS
Beamline
_diffrn_source.pdbx_synchrotron_beamline
24-ID-C
Temperature [K]
_diffrn.ambient_temp
100
Detector technology
_diffrn_detector.detector
CCD
Collection date
_diffrn_detector.pdbx_collection_date
2015-02-19
Detector
_diffrn_detector.type
ADSC QUANTUM 315
Wavelength(s) [Å]
_diffrn_source.pdbx_wavelength_list
0.9791
Software
Data reduction
_software.classification
XDS
Data scaling
_software.classification
Aimless
Phasing
_software.classification
PHASER
Refinement
_software.classification
PHENIX (1.14_3211: ???)
General information
Spacegroup name
_symmetry.space_group_name_H-M
P 1
Unit cell parameters
_cell.length_{a,b,c} _cell.angle_{alpha,beta,gamma}
38.283 65.364 102.362 95.63 92.13 106.59
Wavelength
_diffrn_radiation_wavelength.wavelength
0.97910 Å

Data quality metricsOverall
Low resolution limit [Å]
_reflns.d_resolution_low
101.630
High resolution limit [Å]
_reflns.d_resolution_high
2.270
  Rmerge -
  Rmeas -
  Rpim -
  Total number of observations -
Total number unique
_reflns.number_obs
43656
<I/σ(I)>
_reflns.pdbx_netI_over_sigmaI
10.50
Completeness [%]
_reflns.percent_possible_obs
92.3
Multiplicity
_reflns.pdbx_redundancy
7.3
  CC(1/2) -

Refinement
PDB entry ID
_entry.id
6NDJ
Deposition date
_pdbx_database_status.recvd_initial_deposition_date
2018-12-13
Resolution
_refine.ls_d_res_low _refine.ls_d_res_high
101.6 - 2.270 Å
Rwork/Rfree
_refine.ls_R_factor_R_work _refine.ls_R_factor_R_free
0.1874 / 0.2291
Structure solution method
_refine.pdbx_method_to_determine_struct
MOLECULAR REPLACEMENT
Starting model (for MR)
_refine.pdbx_starting_model
WARNING: no starting model (for MR) given