Data quality metrics extracted from 5nag.cif.gz by aB_cif2table1 from BUSTER (Global Phasing Ltd.). See also the PDBx/mmCIF dictionary and a MXLIMS-compatible JSON representation.


Experimental information for 5NAG at RCSB, PDBe, PDBj

Experiment
Method
_exptl.method
X-RAY DIFFRACTION
Experimental protocol
_diffrn_radiation.pdbx_diffrn_protocol
SINGLE WAVELENGTH
Source type
_diffrn_source.source
SYNCHROTRON
Source details
_diffrn_source.type
ESRF BEAMLINE ID23-1
Synchrotron site
_diffrn_source.pdbx_synchrotron_site
ESRF
Beamline
_diffrn_source.pdbx_synchrotron_beamline
ID23-1
Temperature [K]
_diffrn.ambient_temp
100
Detector technology
_diffrn_detector.detector
PIXEL
Collection date
_diffrn_detector.pdbx_collection_date
2014-09-24
Detector
_diffrn_detector.type
DECTRIS PILATUS 6M
Wavelength(s) [Å]
_diffrn_source.pdbx_wavelength_list
0.979163
Software
Data reduction
_software.classification
XDS
Data scaling
_software.classification
Aimless
Phasing
_software.classification
BUSTER
Refinement
_software.classification
BUSTER (2.11.5)
General information
Spacegroup name
_symmetry.space_group_name_H-M
P 1 21 1
Unit cell parameters
_cell.length_{a,b,c} _cell.angle_{alpha,beta,gamma}
69.672 52.953 135.542 90.0 103.6 90.0
Wavelength
_diffrn_radiation_wavelength.wavelength
0.97916 Å

Data quality metricsOverallOuterShell
Low resolution limit [Å]
_reflns.d_resolution_low _reflns_shell.d_res_low
50.000 1.740
High resolution limit [Å]
_reflns.d_resolution_high _reflns_shell.d_res_high
1.680 1.680
Rmerge
_reflns.pdbx_Rmerge_I_obs _reflns_shell.Rmerge_I_obs
0.052 0.634
  Rmeas - -
  Rpim - -
  Total number of observations - -
Total number unique
_reflns.number_obs _reflns_shell.number_unique_obs
108786 10114
<I/σ(I)>
_reflns.pdbx_netI_over_sigmaI _reflns_shell.meanI_over_sigI_obs
12.90 1.60
Completeness [%]
_reflns.percent_possible_obs _reflns_shell.percent_possible_all
99.1 94.5
Multiplicity
_reflns.pdbx_redundancy _reflns_shell.pdbx_redundancy
3.3 2.7
CC(1/2)
_reflns.pdbx_CC_half _reflns_shell.pdbx_CC_half
0.999 0.621

Refinement
PDB entry ID
_entry.id
5NAG
Deposition date
_pdbx_database_status.recvd_initial_deposition_date
2017-02-27
Resolution
_refine.ls_d_res_low _refine.ls_d_res_high
49.1 - 1.680 Å
Rwork/Rfree
_refine.ls_R_factor_R_work _refine.ls_R_factor_R_free
0.1689 / 0.1977
Structure solution method
_refine.pdbx_method_to_determine_struct
FOURIER SYNTHESIS