Data quality metrics extracted from 5mka.cif.gz by aB_cif2table1 from BUSTER (Global Phasing Ltd.). See also the PDBx/mmCIF dictionary and a MXLIMS-compatible JSON representation.


Experimental information for 5MKA at RCSB, PDBe, PDBj

Experiment
Method
_exptl.method
X-RAY DIFFRACTION
Experimental protocol
_diffrn_radiation.pdbx_diffrn_protocol
SINGLE WAVELENGTH
Source type
_diffrn_source.source
SYNCHROTRON
Source details
_diffrn_source.type
BESSY BEAMLINE 14.1
Synchrotron site
_diffrn_source.pdbx_synchrotron_site
BESSY
Beamline
_diffrn_source.pdbx_synchrotron_beamline
14.1
Temperature [K]
_diffrn.ambient_temp
100
Detector technology
_diffrn_detector.detector
PIXEL
Collection date
_diffrn_detector.pdbx_collection_date
2015-04-28
Detector
_diffrn_detector.type
DECTRIS PILATUS 6M
Wavelength(s) [Å]
_diffrn_source.pdbx_wavelength_list
0.91841
Software
Data reduction
_software.classification
XDS (VERSION November 3, 2014)
Data scaling
_software.classification
XDS (VERSION November 3, 2014)
Phasing
_software.classification
SHELXDE (2013/2)
Refinement
_software.classification
PHENIX (1.10.1-2155_1168: ???)
General information
Spacegroup name
_symmetry.space_group_name_H-M
P 21 21 21
Unit cell parameters
_cell.length_{a,b,c} _cell.angle_{alpha,beta,gamma}
54.620 82.602 84.847 90.0 90.0 90.0
Wavelength
_diffrn_radiation_wavelength.wavelength
0.91841 Å

Data quality metricsOverallOuterShell
Low resolution limit [Å]
_reflns.d_resolution_low _reflns_shell.d_res_low
45.930 1.190
High resolution limit [Å]
_reflns.d_resolution_high _reflns_shell.d_res_high
1.149 1.149
Rmerge
_reflns.pdbx_Rmerge_I_obs _reflns_shell.Rmerge_I_obs
0.087 1.261
  Rmeas - -
  Rpim - -
  Total number of observations - -
Total number unique
_reflns.number_obs
131510 -
<I/σ(I)>
_reflns.pdbx_netI_over_sigmaI _reflns_shell.meanI_over_sigI_obs
21.90 2.00
Completeness [%]
_reflns.percent_possible_obs _reflns_shell.percent_possible_all
96.1 92.7
Multiplicity
_reflns.pdbx_redundancy _reflns_shell.pdbx_redundancy
13.5 13.3
CC(1/2)
_reflns.pdbx_CC_half _reflns_shell.pdbx_CC_half
1.000 0.715

Refinement
PDB entry ID
_entry.id
5MKA
Deposition date
_pdbx_database_status.recvd_initial_deposition_date
2016-12-02
Resolution
_refine.ls_d_res_low _refine.ls_d_res_high
42.4 - 1.149 Å
Rwork/Rfree
_refine.ls_R_factor_R_work _refine.ls_R_factor_R_free
0.1251 / 0.1455
Structure solution method
_refine.pdbx_method_to_determine_struct
SAD