Data quality metrics extracted from 3mdk.cif.gz by aB_cif2table1 from BUSTER (Global Phasing Ltd.). See also the PDBx/mmCIF dictionary and a MXLIMS-compatible JSON representation.


Experimental information for 3MDK at RCSB, PDBe, PDBj

Experiment
Method
_exptl.method
X-RAY DIFFRACTION
Experimental protocol
_diffrn_radiation.pdbx_diffrn_protocol
SINGLE WAVELENGTH
Source type
_diffrn_source.source
SYNCHROTRON
Source details
_diffrn_source.type
NSLS BEAMLINE X29A
Synchrotron site
_diffrn_source.pdbx_synchrotron_site
NSLS
Beamline
_diffrn_source.pdbx_synchrotron_beamline
X29A
Temperature [K]
_diffrn.ambient_temp
100
Detector technology
_diffrn_detector.detector
CCD
Collection date
_diffrn_detector.pdbx_collection_date
2010-02-03
Detector
_diffrn_detector.type
ADSC QUANTUM 315
Wavelength(s) [Å]
_diffrn_source.pdbx_wavelength_list
0.9793
Software
Data collection
_software.classification
CBASS
Data reduction #1
_software.classification
DENZO (Zbyszek Otwinowski; hkl@hkl-xray.com)
Data reduction #2
_software.classification
HKL-2000
Data scaling
_software.classification
SCALEPACK (Zbyszek Otwinowski; hkl@hkl-xray.com)
Phasing #1
_software.classification
SHELXD
Phasing #2
_software.classification
CCP4
Model building
_software.classification
SHELXE
Refinement
_software.classification
REFMAC (Garib N. Murshudov; garib@ysbl.york.ac.uk)
General information
Spacegroup name
_symmetry.space_group_name_H-M
C 1 2 1
Unit cell parameters
_cell.length_{a,b,c} _cell.angle_{alpha,beta,gamma}
108.060 48.916 91.388 90.00 107.24 90.00
Wavelength
_diffrn_radiation_wavelength.wavelength
0.97930 Å

Data quality metricsOverallInnerShellOuterShell
Low resolution limit [Å]
_reflns.d_resolution_low _reflns_shell.d_res_low
50.000 50.000 1.880
High resolution limit [Å]
_reflns.d_resolution_high _reflns_shell.d_res_high
1.850 5.020 1.850
Rmerge
_reflns.pdbx_Rmerge_I_obs _reflns_shell.Rmerge_I_obs
0.077 0.063 0.499
  Rmeas - - -
  Rpim - - -
  Total number of observations - - -
Total number unique
_reflns.number_obs _reflns_shell.number_unique_all
38147 1886 1910
<I/σ(I)>
_reflns.pdbx_netI_over_sigmaI
14.60 - -
Completeness [%]
_reflns.percent_possible_obs _reflns_shell.percent_possible_all
97.1 91.6 97.7
Multiplicity
_reflns.pdbx_redundancy _reflns_shell.pdbx_redundancy
5.9 5.2 5.4
  CC(1/2) - - -

Refinement
PDB entry ID
_entry.id
3MDK
Deposition date
_pdbx_database_status.recvd_initial_deposition_date
2010-03-30
Resolution
_refine.ls_d_res_low _refine.ls_d_res_high
50.0 - 1.850 Å
Rwork/Rfree
_refine.ls_R_factor_R_work _refine.ls_R_factor_R_free
0.2160 / 0.2580
Structure solution method
_refine.pdbx_method_to_determine_struct
SAD