Data quality metrics extracted from 6ma3.cif.gz by aB_cif2table1 from BUSTER (Global Phasing Ltd.). See also the PDBx/mmCIF dictionary and a MXLIMS-compatible JSON representation.


Experimental information for 6MA3 at RCSB, PDBe, PDBj

Experiment
Method
_exptl.method
X-RAY DIFFRACTION
Experimental protocol
_diffrn_radiation.pdbx_diffrn_protocol
SINGLE WAVELENGTH
Source type
_diffrn_source.source
SYNCHROTRON
Source details
_diffrn_source.type
APS BEAMLINE 24-ID-C
Synchrotron site
_diffrn_source.pdbx_synchrotron_site
APS
Beamline
_diffrn_source.pdbx_synchrotron_beamline
24-ID-C
Temperature [K]
_diffrn.ambient_temp
100
Detector technology
_diffrn_detector.detector
PIXEL
Collection date
_diffrn_detector.pdbx_collection_date
2017-02-17
Detector
_diffrn_detector.type
DECTRIS PILATUS 6M-F
Wavelength(s) [Å]
_diffrn_source.pdbx_wavelength_list
0.9791
Software
Data reduction
_software.classification
iMOSFLM
Data scaling
_software.classification
Aimless (0.5.12)
Phasing
_software.classification
PHENIX
Refinement
_software.classification
PHENIX (1.10.1_2155)
General information
Spacegroup name
_symmetry.space_group_name_H-M
P 61 2 2
Unit cell parameters
_cell.length_{a,b,c} _cell.angle_{alpha,beta,gamma}
98.180 98.180 365.104 90.0 90.0 120.0
Wavelength
_diffrn_radiation_wavelength.wavelength
0.97910 Å

Data quality metricsOverallInnerShellOuterShell
Low resolution limit [Å]
_reflns.d_resolution_low _reflns_shell.d_res_low
85.030 85.030 2.040
High resolution limit [Å]
_reflns.d_resolution_high _reflns_shell.d_res_high
2.000 9.590 2.000
Rmerge
_reflns.pdbx_Rmerge_I_obs _reflns_shell.Rmerge_I_obs
0.150 0.041 1.251
Rmeas
_reflns.pdbx_Rrim_I_all _reflns_shell.pdbx_Rrim_I_all
0.165 0.046 1.423
Rpim
_reflns.pdbx_Rpim_I_all _reflns_shell.pdbx_Rpim_I_all
0.067 0.021 0.660
Total number of observations
_reflns.pdbx_number_measured_all
399210 - -
Total number unique
_reflns.number_obs _reflns_shell.number_unique_obs
70965 809 4404
<I/σ(I)>
_reflns.pdbx_netI_over_sigmaI
6.70 - -
Completeness [%]
_reflns.percent_possible_obs _reflns_shell.percent_possible_all
99.3 96.6 97.5
Multiplicity
_reflns.pdbx_redundancy _reflns_shell.pdbx_redundancy
5.6 4.6 4.2
CC(1/2)
_reflns.pdbx_CC_half _reflns_shell.pdbx_CC_half
0.995 0.998 0.469

Refinement
PDB entry ID
_entry.id
6MA3
Deposition date
_pdbx_database_status.recvd_initial_deposition_date
2018-08-25
Resolution
_refine.ls_d_res_low _refine.ls_d_res_high
85.0 - 2.000 Å
Rwork/Rfree
_refine.ls_R_factor_R_work _refine.ls_R_factor_R_free
0.1858 / 0.2117
Structure solution method
_refine.pdbx_method_to_determine_struct
FOURIER SYNTHESIS
Starting model
_refine.pdbx_starting_model
4N3A