Data quality metrics extracted from 6ma2.cif.gz by aB_cif2table1 from BUSTER (Global Phasing Ltd.). See also the PDBx/mmCIF dictionary and a MXLIMS-compatible JSON representation.


Experimental information for 6MA2 at RCSB, PDBe, PDBj

Experiment
Method
_exptl.method
X-RAY DIFFRACTION
Experimental protocol
_diffrn_radiation.pdbx_diffrn_protocol
SINGLE WAVELENGTH
Source type
_diffrn_source.source
SYNCHROTRON
Source details
_diffrn_source.type
APS BEAMLINE 24-ID-E
Synchrotron site
_diffrn_source.pdbx_synchrotron_site
APS
Beamline
_diffrn_source.pdbx_synchrotron_beamline
24-ID-E
Temperature [K]
_diffrn.ambient_temp
100
Detector technology
_diffrn_detector.detector
CCD
Collection date
_diffrn_detector.pdbx_collection_date
2016-06-23
Detector
_diffrn_detector.type
ADSC QUANTUM 315
Wavelength(s) [Å]
_diffrn_source.pdbx_wavelength_list
0.9792
Software
Data reduction
_software.classification
iMOSFLM
Data scaling
_software.classification
Aimless (0.5.12)
Phasing
_software.classification
PHENIX
Refinement
_software.classification
PHENIX (1.10.1_2155)
General information
Spacegroup name
_symmetry.space_group_name_H-M
P 61 2 2
Unit cell parameters
_cell.length_{a,b,c} _cell.angle_{alpha,beta,gamma}
98.610 98.610 365.111 90.0 90.0 120.0
Wavelength
_diffrn_radiation_wavelength.wavelength
0.97920 Å

Data quality metricsOverallInnerShellOuterShell
Low resolution limit [Å]
_reflns.d_resolution_low _reflns_shell.d_res_low
91.280 91.280 2.150
High resolution limit [Å]
_reflns.d_resolution_high _reflns_shell.d_res_high
2.100 9.390 2.100
Rmerge
_reflns.pdbx_Rmerge_I_obs _reflns_shell.Rmerge_I_obs
0.190 0.079 1.230
Rmeas
_reflns.pdbx_Rrim_I_all _reflns_shell.pdbx_Rrim_I_all
0.203 0.085 1.335
Rpim
_reflns.pdbx_Rpim_I_all _reflns_shell.pdbx_Rpim_I_all
0.072 0.032 0.511
Total number of observations
_reflns.pdbx_number_measured_all
483344 - -
Total number unique
_reflns.number_obs _reflns_shell.number_unique_obs
62582 890 4499
<I/σ(I)>
_reflns.pdbx_netI_over_sigmaI
6.20 - -
Completeness [%]
_reflns.percent_possible_obs _reflns_shell.percent_possible_all
100.0 100.0 99.8
Multiplicity
_reflns.pdbx_redundancy _reflns_shell.pdbx_redundancy
7.7 6.6 6.6
CC(1/2)
_reflns.pdbx_CC_half _reflns_shell.pdbx_CC_half
0.992 0.994 0.571

Refinement
PDB entry ID
_entry.id
6MA2
Deposition date
_pdbx_database_status.recvd_initial_deposition_date
2018-08-25
Resolution
_refine.ls_d_res_low _refine.ls_d_res_high
85.4 - 2.100 Å
Rwork/Rfree
_refine.ls_R_factor_R_work _refine.ls_R_factor_R_free
0.1853 / 0.2180
Structure solution method
_refine.pdbx_method_to_determine_struct
FOURIER SYNTHESIS
Starting model
_refine.pdbx_starting_model
4N3A