Data quality metrics extracted from 4m8r.cif.gz by aB_cif2table1 from BUSTER (Global Phasing Ltd.). See also the PDBx/mmCIF dictionary and a MXLIMS-compatible JSON representation.


Experimental information for 4M8R at RCSB, PDBe, PDBj

Experiment
Method
_exptl.method
X-RAY DIFFRACTION
Experimental protocol
_diffrn_radiation.pdbx_diffrn_protocol
MAD
Source type
_diffrn_source.source
SYNCHROTRON
Source details
_diffrn_source.type
SSRL BEAMLINE BL11-1
Synchrotron site
_diffrn_source.pdbx_synchrotron_site
SSRL
Beamline
_diffrn_source.pdbx_synchrotron_beamline
BL11-1
Temperature [K]
_diffrn.ambient_temp
100
Detector technology
_diffrn_detector.detector
PIXEL
Collection date
_diffrn_detector.pdbx_collection_date
2013-01-23
Detector
_diffrn_detector.type
DECTRIS PILATUS 6M
Wavelength(s) [Å]
_diffrn_source.pdbx_wavelength_list
0.91837,0.97941,0.97871
Software
Data reduction
_software.classification
MOSFLM
Data scaling
_software.classification
SCALA (3.3.20; Phil Evans; pre@mrc-lmb.cam.ac.uk)
Phasing #1
_software.classification
SHELX (George M. Sheldrick; gsheldr@shelx.uni-ac.gwdg.de)
Phasing #2
_software.classification
SHARP (Eric de La Fortelle; sharp-develop@globalphasing.com)
Phasing #3
_software.classification
SHELXD
Phasing #4
_software.classification
autoSHARP
Model building
_software.classification
MolProbity (3beta29; D.C. & J.S. Richardson lab; molprobity@kinemage.biochem.duke.edu)
Refinement
_software.classification
REFMAC (5.7.0032; Garib N. Murshudov; garib@ysbl.york.ac.uk)
General information
Spacegroup name
_symmetry.space_group_name_H-M
P 61 2 2
Unit cell parameters
_cell.length_{a,b,c} _cell.angle_{alpha,beta,gamma}
123.084 123.084 269.910 90.0 90.0 120.0
Wavelength
_diffrn_radiation_wavelength.wavelength
0.918370.979410.97871 Å

Data quality metricsOverallInnerShellOuterShell
Low resolution limit [Å]
_reflns.d_resolution_low _reflns_shell.d_res_low
33.739 33.739 2.560
High resolution limit [Å]
_reflns.d_resolution_high _reflns_shell.d_res_high
2.500 11.180 2.500
Rmerge
_reflns.pdbx_Rsym_value _reflns_shell.pdbx_Rsym_value
0.166 0.063 1.764
  Rmeas - - -
  Rpim - - -
Total number of observations
_reflns_shell.number_measured_all
- 7673 42982
Total number unique
_reflns.number_obs _reflns_shell.number_unique_all
42660 570 3114
<I/σ(I)>
_reflns.pdbx_netI_over_sigmaI _reflns_shell.meanI_over_sigI_obs
13.20 36.10 1.60
Completeness [%]
_reflns.percent_possible_obs _reflns_shell.percent_possible_all
99.9 96.2 100.0
Multiplicity
_reflns.pdbx_redundancy _reflns_shell.pdbx_redundancy
14.1 13.5 13.8
  CC(1/2) - - -

Refinement
PDB entry ID
_entry.id
4M8R
Deposition date
_pdbx_database_status.recvd_initial_deposition_date
2013-08-13
Resolution
_refine.ls_d_res_low _refine.ls_d_res_high
33.7 - 2.500 Å
Rwork/Rfree
_refine.ls_R_factor_R_work _refine.ls_R_factor_R_free
0.2015 / 0.2218
Structure solution method
_refine.pdbx_method_to_determine_struct
MAD