Data quality metrics extracted from 6m72.cif.gz by aB_cif2table1 from BUSTER (Global Phasing Ltd.). See also the PDBx/mmCIF dictionary and a MXLIMS-compatible JSON representation.


Experimental information for 6M72 at RCSB, PDBe, PDBj

Experiment
Method
_exptl.method
X-RAY DIFFRACTION
Experimental protocol
_diffrn_radiation.pdbx_diffrn_protocol
SINGLE WAVELENGTH
Source type
_diffrn_source.source
SYNCHROTRON
Source details
_diffrn_source.type
ESRF BEAMLINE BM14
Synchrotron site
_diffrn_source.pdbx_synchrotron_site
ESRF
Beamline
_diffrn_source.pdbx_synchrotron_beamline
BM14
Temperature [K]
_diffrn.ambient_temp
100
Detector technology
_diffrn_detector.detector
CCD
Collection date
_diffrn_detector.pdbx_collection_date
2015-05-21
Detector
_diffrn_detector.type
MARMOSAIC 225 mm CCD
Wavelength(s) [Å]
_diffrn_source.pdbx_wavelength_list
0.95372
Software
Data reduction
_software.classification
MOSFLM (Andrew G.W. Leslie; andrew@mrc-lmb.cam.ac.uk)
Data scaling
_software.classification
SCALA (3.3.21; 2013/01/04; Phil R. Evans; pre@mrc-lmb.cam.ac.uk)
Phasing
_software.classification
PHASER (Randy J. Read; cimr-phaser@lists.cam.ac.uk)
Refinement
_software.classification
REFMAC (5.8.0238; Garib N. Murshudov; garib@ysbl.york.ac.uk)
General information
Spacegroup name
_symmetry.space_group_name_H-M
P 21 21 2
Unit cell parameters
_cell.length_{a,b,c} _cell.angle_{alpha,beta,gamma}
192.029 37.090 44.650 90.0 90.0 90.0
Wavelength
_diffrn_radiation_wavelength.wavelength
0.95372 Å

Data quality metricsOverallInnerShellOuterShell
Low resolution limit [Å]
_reflns.d_resolution_low _reflns_shell.d_res_low
40.490 5.060 1.690
High resolution limit [Å]
_reflns.d_resolution_high _reflns_shell.d_res_high
1.600 3.580 1.600
Rmerge
_reflns.pdbx_Rsym_value _reflns_shell.Rmerge_I_obs
0.149 0.127 0.546
Rmeas
_reflns.pdbx_Rrim_I_all _reflns_shell.pdbx_Rrim_I_all
0.167 0.142 0.613
Rpim
_reflns.pdbx_Rpim_I_all _reflns_shell.pdbx_Rpim_I_all
0.073 0.062 0.270
  Total number of observations - - -
Total number unique
_reflns.number_obs _reflns_shell.number_unique_obs
42971 2543 6201
<I/σ(I)>
_reflns.pdbx_netI_over_sigmaI _reflns_shell.meanI_over_sigI_obs
5.70 4.20 1.30
Completeness [%]
_reflns.percent_possible_obs _reflns_shell.percent_possible_all
99.4 97.6 100.0
Multiplicity
_reflns.pdbx_redundancy _reflns_shell.pdbx_redundancy
4.9 4.9 4.9
CC(1/2)
_reflns.pdbx_CC_half
0.983 - -

Refinement
PDB entry ID
_entry.id
6M72
Deposition date
_pdbx_database_status.recvd_initial_deposition_date
2020-03-16
Resolution
_refine.ls_d_res_low _refine.ls_d_res_high
36.6 - 1.600 Å
Rwork/Rfree
_refine.ls_R_factor_R_work _refine.ls_R_factor_R_free
0.2005 / 0.2448
Structure solution method
_refine.pdbx_method_to_determine_struct
MOLECULAR REPLACEMENT
Starting model (for MR)
_refine.pdbx_starting_model
5GG5