Data quality metrics extracted from 1m2d.cif.gz by aB_cif2table1 from BUSTER (Global Phasing Ltd.). See also the PDBx/mmCIF dictionary and a MXLIMS-compatible JSON representation.


Experimental information for 1M2D at RCSB, PDBe, PDBj

Experiment
Method
_exptl.method
X-RAY DIFFRACTION
Experimental protocol
_diffrn_radiation.pdbx_diffrn_protocol
SINGLE WAVELENGTH
Source type
_diffrn_source.source
SYNCHROTRON
Source details
_diffrn_source.type
SSRL BEAMLINE BL9-2
Synchrotron site
_diffrn_source.pdbx_synchrotron_site
SSRL
Beamline
_diffrn_source.pdbx_synchrotron_beamline
BL9-2
Temperature [K]
_diffrn.ambient_temp
100
Detector technology
_diffrn_detector.detector
CCD
Collection date
_diffrn_detector.pdbx_collection_date
2001-01-18
Detector
_diffrn_detector.type
ADSC QUANTUM 4
Wavelength(s) [Å]
_diffrn_source.pdbx_wavelength_list
0.9580
Software
Data reduction
_software.classification
DENZO
Data scaling
_software.classification
SCALEPACK
Phasing
_software.classification
CNS
Refinement #1
_software.classification
CNS
Refinement #2
_software.classification
SHELXL-97
General information
Spacegroup name
_symmetry.space_group_name_H-M
C 1 2 1
Unit cell parameters
_cell.length_{a,b,c} _cell.angle_{alpha,beta,gamma}
67.3 59.8 46.8 90.0 109.3 90.0
Wavelength
_diffrn_radiation_wavelength.wavelength
0.95800 Å

Data quality metricsOverallOuterShell
Low resolution limit [Å]
_reflns.d_resolution_low _reflns_shell.d_res_low
31.200 1.070
High resolution limit [Å]
_reflns.d_resolution_high _reflns_shell.d_res_high
1.050 1.050
Rmerge
_reflns.pdbx_Rmerge_I_obs _reflns_shell.Rmerge_I_obs
0.035 0.216
  Rmeas - -
  Rpim - -
  Total number of observations - -
Total number unique
_reflns.number_obs _reflns_shell.number_unique_all
77950 3725
<I/σ(I)>
_reflns.pdbx_netI_over_sigmaI _reflns_shell.meanI_over_sigI_obs
38.20 6.40
Completeness [%]
_reflns.percent_possible_obs _reflns_shell.percent_possible_all
95.6 92.0
Multiplicity
_reflns.pdbx_redundancy _reflns_shell.pdbx_redundancy
4.6 3.3
  CC(1/2) - -

Refinement
PDB entry ID
_entry.id
1M2D
Deposition date
_pdbx_database_status.recvd_initial_deposition_date
2002-06-22
Resolution
_refine.ls_d_res_low _refine.ls_d_res_high
31.2 - 1.050 Å
Rwork/Rfree
_refine.ls_R_factor_R_work _refine.ls_R_factor_R_free
0.1370 / 0.1620
Structure solution method
_refine.pdbx_method_to_determine_struct
FOURIER SYNTHESIS
Starting model
_refine.pdbx_starting_model
PDB ENTRY 1M2B, Cys55Ser Aquifex aeolicus [2Fe-2S] ferredoxin structure