Data quality metrics extracted from 5m1p.cif.gz by aB_cif2table1 from BUSTER (Global Phasing Ltd.). See also the PDBx/mmCIF dictionary and a MXLIMS-compatible JSON representation.


Experimental information for 5M1P at RCSB, PDBe, PDBj

Experiment
Method
_exptl.method
X-RAY DIFFRACTION
Experimental protocol
_diffrn_radiation.pdbx_diffrn_protocol
SINGLE WAVELENGTH
Source type
_diffrn_source.source
SYNCHROTRON
Source details
_diffrn_source.type
DIAMOND BEAMLINE I02
Synchrotron site
_diffrn_source.pdbx_synchrotron_site
Diamond
Beamline
_diffrn_source.pdbx_synchrotron_beamline
I02
Temperature [K]
_diffrn.ambient_temp
100
Detector technology
_diffrn_detector.detector
PIXEL
Collection date
_diffrn_detector.pdbx_collection_date
2016-04-18
Detector
_diffrn_detector.type
DECTRIS PILATUS 6M-F
Wavelength(s) [Å]
_diffrn_source.pdbx_wavelength_list
0.9795
Software
Data reduction
_software.classification
XDS
Data scaling #1
_software.classification
Aimless (0.5.27)
Data scaling #2
_software.classification
XDS
Phasing
_software.classification
PHASER
Refinement
_software.classification
REFMAC (5.8.0155)
General information
Spacegroup name
_symmetry.space_group_name_H-M
P 1 21 1
Unit cell parameters
_cell.length_{a,b,c} _cell.angle_{alpha,beta,gamma}
43.453 53.597 69.852 90.0 91.8 90.0
Wavelength
_diffrn_radiation_wavelength.wavelength
0.97950 Å

Data quality metricsOverallInnerShellOuterShell
Low resolution limit [Å]
_reflns.d_resolution_low _reflns_shell.d_res_low
43.430 43.430 1.120
High resolution limit [Å]
_reflns.d_resolution_high _reflns_shell.d_res_high
1.100 6.020 1.100
Rmerge
_reflns.pdbx_Rmerge_I_obs _reflns_shell.Rmerge_I_obs
0.078 0.046 0.970
Rmeas
_reflns.pdbx_Rrim_I_all
0.094 - -
Rpim
_reflns.pdbx_Rpim_I_all
0.052 - -
Total number of observations
_reflns.pdbx_number_measured_all
409240 - -
Total number unique
_reflns.number_obs
129065 - -
<I/σ(I)>
_reflns.pdbx_netI_over_sigmaI
6.50 - -
Completeness [%]
_reflns.percent_possible_obs _reflns_shell.percent_possible_all
99.4 99.3 99.4
Multiplicity
_reflns.pdbx_redundancy _reflns_shell.pdbx_redundancy
3.2 3.4 3.0
CC(1/2)
_reflns.pdbx_CC_half _reflns_shell.pdbx_CC_half
0.996 0.994 0.401

Refinement
PDB entry ID
_entry.id
5M1P
Deposition date
_pdbx_database_status.recvd_initial_deposition_date
2016-10-09
Resolution
_refine.ls_d_res_low _refine.ls_d_res_high
43.4 - 1.100 Å
Rwork/Rfree
_refine.ls_R_factor_R_work _refine.ls_R_factor_R_free
0.2222 / 0.2348
Structure solution method
_refine.pdbx_method_to_determine_struct
SAD