Data quality metrics extracted from 5m1k.cif.gz by aB_cif2table1 from BUSTER (Global Phasing Ltd.). See also the PDBx/mmCIF dictionary and a MXLIMS-compatible JSON representation.


Experimental information for 5M1K at RCSB, PDBe, PDBj

Experiment
Method
_exptl.method
X-RAY DIFFRACTION
Experimental protocol
_diffrn_radiation.pdbx_diffrn_protocol
SINGLE WAVELENGTH
Source type
_diffrn_source.source
SYNCHROTRON
Source details
_diffrn_source.type
DIAMOND BEAMLINE I02
Synchrotron site
_diffrn_source.pdbx_synchrotron_site
Diamond
Beamline
_diffrn_source.pdbx_synchrotron_beamline
I02
Temperature [K]
_diffrn.ambient_temp
100
Detector technology
_diffrn_detector.detector
PIXEL
Collection date
_diffrn_detector.pdbx_collection_date
2016-03-06
Detector
_diffrn_detector.type
DECTRIS PILATUS 6M-F
Wavelength(s) [Å]
_diffrn_source.pdbx_wavelength_list
0.9796
Software
Data reduction
_software.classification
XDS
Data scaling #1
_software.classification
Aimless
Data scaling #2
_software.classification
XDS
Phasing
_software.classification
PHASER
Refinement
_software.classification
REFMAC (5.8.0155)
General information
Spacegroup name
_symmetry.space_group_name_H-M
P 1 21 1
Unit cell parameters
_cell.length_{a,b,c} _cell.angle_{alpha,beta,gamma}
43.807 54.057 69.950 90.00 91.94 90.00
Wavelength
_diffrn_radiation_wavelength.wavelength
0.97960 Å

Data quality metricsOverallInnerShellOuterShell
Low resolution limit [Å]
_reflns.d_resolution_low _reflns_shell.d_res_low
43.780 43.780 1.220
High resolution limit [Å]
_reflns.d_resolution_high _reflns_shell.d_res_high
1.200 6.570 1.200
Rmerge
_reflns.pdbx_Rmerge_I_obs _reflns_shell.Rmerge_I_obs
0.073 0.043 0.765
Rmeas
_reflns.pdbx_Rrim_I_all
0.091 - -
Rpim
_reflns.pdbx_Rpim_I_all
0.054 - -
Total number of observations
_reflns.pdbx_number_measured_all
250958 - -
Total number unique
_reflns.number_obs
98722 - -
<I/σ(I)>
_reflns.pdbx_netI_over_sigmaI
7.40 - -
Completeness [%]
_reflns.percent_possible_obs _reflns_shell.percent_possible_all
97.0 94.0 97.6
Multiplicity
_reflns.pdbx_redundancy _reflns_shell.pdbx_redundancy
2.5 2.7 2.5
CC(1/2)
_reflns.pdbx_CC_half _reflns_shell.pdbx_CC_half
0.996 0.991 0.522

Refinement
PDB entry ID
_entry.id
5M1K
Deposition date
_pdbx_database_status.recvd_initial_deposition_date
2016-10-09
Resolution
_refine.ls_d_res_low _refine.ls_d_res_high
43.8 - 1.200 Å
Rwork/Rfree
_refine.ls_R_factor_R_work _refine.ls_R_factor_R_free
0.1832 / 0.2087
Structure solution method
_refine.pdbx_method_to_determine_struct
SAD