Data quality metrics extracted from 3lyo.cif.gz by aB_cif2table1 from BUSTER (Global Phasing Ltd.). See also the PDBx/mmCIF dictionary and a MXLIMS-compatible JSON representation.


Experimental information for 3LYO at RCSB, PDBe, PDBj

Experiment
Method
_exptl.method
X-RAY DIFFRACTION
Source type
_diffrn_source.source
ROTATING ANODE
Source details
_diffrn_source.type
RIGAKU
Temperature [K]
_diffrn.ambient_temp
285
Detector technology
_diffrn_detector.detector
IMAGE PLATE
Collection date
_diffrn_detector.pdbx_collection_date
1995-12
Detector
_diffrn_detector.type
RIGAKU RAXIS IIC
Software
Data collection
_software.classification
R-AXIS
Data reduction
_software.classification
R-AXIS
Data scaling
_software.classification
R-AXIS
Phasing
_software.classification
X-PLOR (3.1)
Model building
_software.classification
X-PLOR (3.1)
Refinement
_software.classification
X-PLOR (3.1)
General information
Spacegroup name
_symmetry.space_group_name_H-M
P 43 21 2
Unit cell parameters
_cell.length_{a,b,c} _cell.angle_{alpha,beta,gamma}
78.78 78.78 36.90 90.0 90.0 90.0
Wavelength
_diffrn_radiation_wavelength.wavelength
1.54180 Å

Data quality metricsOverall
Low resolution limit [Å]
_reflns.d_resolution_low
80.000
High resolution limit [Å]
_reflns.d_resolution_high
1.930
Rmerge
_reflns.pdbx_Rmerge_I_obs
0.067
  Rmeas -
  Rpim -
  Total number of observations -
Total number unique
_reflns.number_obs
8343
<I/σ(I)>
_reflns.pdbx_netI_over_sigmaI
12.80
Completeness [%]
_reflns.percent_possible_obs
89.6
  Multiplicity -
  CC(1/2) -

Refinement
PDB entry ID
_entry.id
3LYO
Deposition date
_pdbx_database_status.recvd_initial_deposition_date
1998-03-11
Resolution
_refine.ls_d_res_low _refine.ls_d_res_high
8.0 - 1.930 Å
Rwork/Rfree
_refine.ls_R_factor_R_work _refine.ls_R_factor_R_free
0.1790 / 0.2080
Structure solution method
_refine.pdbx_method_to_determine_struct
DIRECT REFINEMENT
Starting model
_refine.pdbx_starting_model
PDB ENTRY 6LYT