Data quality metrics extracted from 5lcd.cif.gz by aB_cif2table1 from BUSTER (Global Phasing Ltd.). See also the PDBx/mmCIF dictionary and a MXLIMS-compatible JSON representation.


Experimental information for 5LCD at RCSB, PDBe, PDBj

Experiment
Method
_exptl.method
X-RAY DIFFRACTION
Experimental protocol
_diffrn_radiation.pdbx_diffrn_protocol
SINGLE WAVELENGTH
Source type
_diffrn_source.source
SYNCHROTRON
Source details
_diffrn_source.type
SLS BEAMLINE X06SA
Synchrotron site
_diffrn_source.pdbx_synchrotron_site
SLS
Beamline
_diffrn_source.pdbx_synchrotron_beamline
X06SA
Temperature [K]
_diffrn.ambient_temp
100.0
Detector technology
_diffrn_detector.detector
PIXEL
Collection date
_diffrn_detector.pdbx_collection_date
2015-08-28
Detector
_diffrn_detector.type
DECTRIS PILATUS3 6M
Wavelength(s) [Å]
_diffrn_source.pdbx_wavelength_list
1.000010
Software
Data reduction
_software.classification
autoPROC (1.0.5)
Data scaling
_software.classification
Aimless (0.5.14)
Phasing
_software.classification
MOLREP
Refinement
_software.classification
BUSTER-TNT (2.10.3)
General information
Spacegroup name
_symmetry.space_group_name_H-M
P 43 21 2
Unit cell parameters
_cell.length_{a,b,c} _cell.angle_{alpha,beta,gamma}
164.441 164.441 95.044 90.0 90.0 90.0
Wavelength
_diffrn_radiation_wavelength.wavelength
1.00001 Å

Data quality metricsOverall
Low resolution limit [Å]
_reflns.d_resolution_low
116.280
High resolution limit [Å]
_reflns.d_resolution_high
2.660
Rmerge
_reflns.pdbx_Rmerge_I_obs
0.322
Rmeas
_reflns.pdbx_Rrim_I_all
0.329
Rpim
_reflns.pdbx_Rpim_I_all
0.049
Total number of observations
_reflns.pdbx_number_measured_all
1661253
Total number unique
_reflns.number_obs
37790
<I/σ(I)>
_reflns.pdbx_netI_over_sigmaI
17.30
Completeness [%]
_reflns.percent_possible_obs
99.6
Multiplicity
_reflns.pdbx_redundancy
44.0
CC(1/2)
_reflns.pdbx_CC_half
0.998

Refinement
PDB entry ID
_entry.id
5LCD
Deposition date
_pdbx_database_status.recvd_initial_deposition_date
2016-06-21
Resolution
_refine.ls_d_res_low _refine.ls_d_res_high
116.3 - 2.660 Å
Rwork/Rfree
_refine.ls_R_factor_R_work _refine.ls_R_factor_R_free
0.2080 / 0.2530
Structure solution method
_refine.pdbx_method_to_determine_struct
MOLECULAR REPLACEMENT
Starting model (for MR)
_refine.pdbx_starting_model
5LC9