Data quality metrics extracted from 5l7y.cif.gz by aB_cif2table1 from BUSTER (Global Phasing Ltd.). See also the PDBx/mmCIF dictionary and a MXLIMS-compatible JSON representation.


Experimental information for 5L7Y at RCSB, PDBe, PDBj

Experiment
Method
_exptl.method
X-RAY DIFFRACTION
Experimental protocol
_diffrn_radiation.pdbx_diffrn_protocol
SINGLE WAVELENGTH
Source type
_diffrn_source.source
SYNCHROTRON
Source details
_diffrn_source.type
PETRA III, EMBL c/o DESY BEAMLINE P13 (MX1)
Synchrotron site
_diffrn_source.pdbx_synchrotron_site
PETRA III, EMBL c/o DESY
Beamline
_diffrn_source.pdbx_synchrotron_beamline
P13 (MX1)
Temperature [K]
_diffrn.ambient_temp
100
Detector technology
_diffrn_detector.detector
PIXEL
Collection date
_diffrn_detector.pdbx_collection_date
2015-11-06
Detector
_diffrn_detector.type
DECTRIS PILATUS 6M
Wavelength(s) [Å]
_diffrn_source.pdbx_wavelength_list
0.799900
Software
Data reduction
_software.classification
XDS
Data scaling
_software.classification
XDS
Phasing
_software.classification
PHENIX
Refinement
_software.classification
PHENIX (1.10.1_2155: 000)
General information
Spacegroup name
_symmetry.space_group_name_H-M
I 4 2 2
Unit cell parameters
_cell.length_{a,b,c} _cell.angle_{alpha,beta,gamma}
91.571 91.571 132.518 90.0 90.0 90.0
Wavelength
_diffrn_radiation_wavelength.wavelength
0.79990 Å

Data quality metricsOverallOuterShell
Low resolution limit [Å]
_reflns.d_resolution_low _reflns_shell.d_res_low
50.000 2.030
High resolution limit [Å]
_reflns.d_resolution_high _reflns_shell.d_res_high
1.910 1.910
Rmerge
_reflns.pdbx_Rsym_value _reflns_shell.Rmerge_I_obs
0.088 0.497
  Rmeas - -
  Rpim - -
  Total number of observations - -
Total number unique
_reflns.number_obs
21943 -
<I/σ(I)>
_reflns.pdbx_netI_over_sigmaI _reflns_shell.meanI_over_sigI_obs
16.75 3.71
Completeness [%]
_reflns.percent_possible_obs _reflns_shell.percent_possible_all
98.9 94.8
Multiplicity
_reflns.pdbx_redundancy _reflns_shell.pdbx_redundancy
7.2 6.7
  CC(1/2) - -

Refinement
PDB entry ID
_entry.id
5L7Y
Deposition date
_pdbx_database_status.recvd_initial_deposition_date
2016-06-04
Resolution
_refine.ls_d_res_low _refine.ls_d_res_high
46.3 - 1.912 Å
Rwork/Rfree
_refine.ls_R_factor_R_work _refine.ls_R_factor_R_free
0.1379 / 0.1645
Structure solution method
_refine.pdbx_method_to_determine_struct
MOLECULAR REPLACEMENT
Starting model (for MR)
_refine.pdbx_starting_model
5EN4