Data quality metrics extracted from 5l3d.cif.gz by aB_cif2table1 from BUSTER (Global Phasing Ltd.). See also the PDBx/mmCIF dictionary and a MXLIMS-compatible JSON representation.


Experimental information for 5L3D at RCSB, PDBe, PDBj

Experiment
Method
_exptl.method
X-RAY DIFFRACTION
Experimental protocol
_diffrn_radiation.pdbx_diffrn_protocol
SINGLE WAVELENGTH
Source type
_diffrn_source.source
SYNCHROTRON
Source details
_diffrn_source.type
SLS BEAMLINE X06DA
Synchrotron site
_diffrn_source.pdbx_synchrotron_site
SLS
Beamline
_diffrn_source.pdbx_synchrotron_beamline
X06DA
Temperature [K]
_diffrn.ambient_temp
100
Detector technology
_diffrn_detector.detector
PIXEL
Collection date
_diffrn_detector.pdbx_collection_date
2015-02-15
Detector
_diffrn_detector.type
DECTRIS PILATUS 300K
Wavelength(s) [Å]
_diffrn_source.pdbx_wavelength_list
1
Software
Data reduction
_software.classification
XDS
Data scaling
_software.classification
Aimless
Phasing
_software.classification
REFMAC
Refinement
_software.classification
REFMAC (5.8.0135)
General information
Spacegroup name
_symmetry.space_group_name_H-M
I 2 2 2
Unit cell parameters
_cell.length_{a,b,c} _cell.angle_{alpha,beta,gamma}
120.309 177.687 235.233 90.0 90.0 90.0
Wavelength
_diffrn_radiation_wavelength.wavelength
1.00000 Å

Data quality metricsOverall
Low resolution limit [Å]
_reflns.d_resolution_low
100.000
High resolution limit [Å]
_reflns.d_resolution_high
2.600
Rmerge
_reflns.pdbx_Rsym_value
0.076
  Rmeas -
  Rpim -
  Total number of observations -
Total number unique
_reflns.number_obs
76680
<I/σ(I)>
_reflns.pdbx_netI_over_sigmaI
10.50
Completeness [%]
_reflns.percent_possible_obs
99.2
Multiplicity
_reflns.pdbx_redundancy
4.4
CC(1/2)
_reflns.pdbx_CC_half
0.992

Refinement
PDB entry ID
_entry.id
5L3D
Deposition date
_pdbx_database_status.recvd_initial_deposition_date
2016-04-06
Resolution
_refine.ls_d_res_low _refine.ls_d_res_high
100.0 - 2.600 Å
Rwork/Rfree
_refine.ls_R_factor_R_work _refine.ls_R_factor_R_free
0.2076 / 0.2188
Structure solution method
_refine.pdbx_method_to_determine_struct
FOURIER SYNTHESIS