Data quality metrics extracted from 7kyt.cif.gz by aB_cif2table1 from BUSTER (Global Phasing Ltd.). See also the PDBx/mmCIF dictionary and a MXLIMS-compatible JSON representation.


Experimental information for 7KYT at RCSB, PDBe, PDBj

Experiment
Method
_exptl.method
X-RAY DIFFRACTION
Experimental protocol
_diffrn_radiation.pdbx_diffrn_protocol
SINGLE WAVELENGTH
Source type
_diffrn_source.source
SYNCHROTRON
Source details
_diffrn_source.type
APS BEAMLINE 24-ID-C
Synchrotron site
_diffrn_source.pdbx_synchrotron_site
APS
Beamline
_diffrn_source.pdbx_synchrotron_beamline
24-ID-C
Temperature [K]
_diffrn.ambient_temp
100
Detector technology
_diffrn_detector.detector
PIXEL
Collection date
_diffrn_detector.pdbx_collection_date
2020-02-05
Detector
_diffrn_detector.type
DECTRIS PILATUS 6M
Wavelength(s) [Å]
_diffrn_source.pdbx_wavelength_list
1.000000
Software
Data reduction
_software.classification
iMOSFLM (7.2.2)
Data scaling
_software.classification
SCALA (3.3.22)
Phasing #1
_software.classification
MOLREP (11.7.02)
Phasing #2
_software.classification
DM (7.0.078)
Refinement
_software.classification
REFMAC (5.8.0258)
General information
Spacegroup name
_symmetry.space_group_name_H-M
C 1 2 1
Unit cell parameters
_cell.length_{a,b,c} _cell.angle_{alpha,beta,gamma}
184.46 61.25 67.56 90.00 94.57 90.00
Wavelength
_diffrn_radiation_wavelength.wavelength
1.00000 Å

Data quality metricsOverallInnerShellOuterShell
Low resolution limit [Å]
_reflns.d_resolution_low _reflns_shell.d_res_low
91.937 19.566 1.420
High resolution limit [Å]
_reflns.d_resolution_high _reflns_shell.d_res_high
1.350 4.270 1.350
Rmerge
_reflns.pdbx_Rmerge_I_obs _reflns_shell.Rmerge_I_obs
0.078 0.024 0.838
Rmeas
_reflns.pdbx_Rrim_I_all _reflns_shell.pdbx_Rrim_I_all
0.108 0.037 1.106
Rpim
_reflns.pdbx_Rpim_I_all _reflns_shell.pdbx_Rpim_I_all
0.058 0.019 0.600
Total number of observations
_reflns_shell.number_measured_all
- 16708 76845
Total number unique
_reflns.number_obs _reflns_shell.number_unique_obs
162194 4768 23532
<I/σ(I)>
_reflns.pdbx_netI_over_sigmaI _reflns_shell.meanI_over_sigI_obs
5.70 24.60 0.90
Completeness [%]
_reflns.percent_possible_obs _reflns_shell.percent_possible_all
98.7 89.0 98.6
Multiplicity
_reflns.pdbx_redundancy _reflns_shell.pdbx_redundancy
3.3 3.5 3.3
  CC(1/2) - - -

Refinement
PDB entry ID
_entry.id
7KYT
Deposition date
_pdbx_database_status.recvd_initial_deposition_date
2020-12-08
Resolution
_refine.ls_d_res_low _refine.ls_d_res_high
19.6 - 1.350 Å
Rwork/Rfree
_refine.ls_R_factor_R_work _refine.ls_R_factor_R_free
0.1745 / 0.2086
Structure solution method
_refine.pdbx_method_to_determine_struct
MOLECULAR REPLACEMENT
Starting model (for MR)
_refine.pdbx_starting_model
7KXC